G119893


Basic Information

Item Value
gene id G119893
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19683793 ~ 19685529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU138347
cctccatcctttctctcacaataacaacacaacaGTAAAGTAAAACACTGCATCTCACAAGGACTGGAATAGTCTGACTGCATTGACAGAGTTACGTTAGTTCCAGGGTTCAACGTAtagaatacagacagacagacggacggacggacagacagacagttgtatgtacacacacagggCTACTCATCCAGCAGGGCAAAAGTCCTGACCTAAATTAGTCATCACTACCCAGAAACCCCTAGGGACTGTTGATTACATCACTAGGCCTAAATCAGGCCTGTCTATCACCCCATGGGTTTTAACCCCTTcctcaccctccatccctcttcagACCCCACCCATCTTTCCCTTCCCTCAATCAGCACACTTTTttgctctctttccctccatttcTGTGTTAATTGACCAACTAACACCAGCCTCCTGTTAAAACAATGCAGCCAAGTGACCCAGACAAGTGCCCATCCCCAGCAGTGATCACGTCCACAGCAGCTGCTGCTGTGCATCTCACCACTCTCCTTGTCAGACTGTGGTTGTAGGACCGCAATAGTCCACTAAGGGGCGCCAAACAGCATGGCGGCTGTGTAAACTTACAGTAGATCAGTGTCCACTCAAAGCAGAAGCTGCTCCAAAGCACAGCTCCAGACTCACCGTGGCCTAACCTTAGCAATTAAGAGGAAAAAGctaaactgaccttggatcagatATAAGATAACTTGGTCATATACTAATGCATCCTGTAAATCAGTTATTTCAGGTGATAATTCCAGTTGTGCTGGAGATTATAAAGGAAAATTAGctacaacactaccacaacaacaatgGGAATTACAAACTACTGACACTATATGCATTTACAATAATATATTATGTACATAAAttaattaatgtatttatttatcaagACTATATTAGTGTGAGTCACCATCATTCCTTTCTGTACCATCTTTCATTTAAAGAGATTTGCCCTCAGTCTTTTCCCTCAGTAATAAATAAATACTCTGTTgcaatagatagagagacagagggagagggcaaGAAAAGGGGgacagaaggggagagagtgTAGAGTTGGGGCTGAGAGGGAAagatgtagagggagaggatggtAAGGAGAGGAAGccaggagaggggtgaagagagtaggggaggggtgagagagagaaaaataaagagagggggaagagagagagagagtacactgAGGTTGAGGTGATAATATACAGTGTTCTGCTGGAATCCTCCTCTAgtcaggggttaaaggtcaggtgAAGGTCAAGTGAAAGGGATTGTGGGACGGCCTCAGAACTGCTGCCAGTTGGTGGAACCATCATCATTGGCAAGAGGAGACATTGACCTGTTTTCTGGGGCAGAGAAGTCTCCCCACATGTCCGAGCCGCCTGCAGGGTTGGGGTTCGGCTGCACCACAGAGTTGGAGTTACTGCTGTCCAGGTCTAACAAACAGCCTGAGAACAGAGAGACCAcgatagaattaggaattagaaaaATAAtgtaataggatctctatggagaCAACACACATCAAACCCTTCAATACACACCCTCTACTGCTTTCTCTACATTCATACTCTAACGACAATAGCCTTTTTTCTTGGTTAGCTCataaaactaaaataaaaaacac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138347 True 1645 lncRNA 0.45 2 19683793 19685529

Neighbor

gene id symbol gene type direction distance location
LOC110537226 LOC106575133 coding upstream 734 19676656 ~ 19683059 (+)
LOC110537142 LOC106576877 coding upstream 38467 19637434 ~ 19645326 (+)
LOC110537165 LOC106605824 coding upstream 84377 19597513 ~ 19599416 (+)
LOC110537107 LOC106605819 coding upstream 104282 19565879 ~ 19579511 (+)
LOC110537095 LOC106576906 coding upstream 155874 19526163 ~ 19528660 (+)
LOC118944064 NA coding downstream 12962 19698491 ~ 19699519 (+)
LOC110537243 LOC106576860 coding downstream 89900 19768270 ~ 19778335 (+)
LOC110537251 LOC106605841 coding downstream 110865 19796394 ~ 19828604 (+)
LOC110537257 LOC106576842 coding downstream 147860 19833389 ~ 19892698 (+)
ecac ecac coding downstream 212790 19898319 ~ 19910352 (+)
G119916 LOC106605822 non-coding upstream 88626 19591542 ~ 19595167 (+)
G119909 NA non-coding upstream 101419 19580821 ~ 19582374 (+)
G119883 NA non-coding upstream 120943 19552715 ~ 19562850 (+)
G119866 NA non-coding upstream 164116 19518941 ~ 19519677 (+)
G119795 NA non-coding upstream 177293 19504866 ~ 19506500 (+)
G119955 LOC106605829 non-coding downstream 24953 19710482 ~ 19713435 (+)
G119986 NA non-coding downstream 72929 19758458 ~ 19758725 (+)
G120018 NA non-coding downstream 134443 19819972 ~ 19821386 (+)
G120031 NA non-coding downstream 163970 19849499 ~ 19850437 (+)
G120032 NA non-coding downstream 164207 19849736 ~ 19850902 (+)
G119794 u2af2 other upstream 176455 19506651 ~ 19507338 (+)
LOC110503718 LOC102193556 other upstream 426299 19131905 ~ 19259074 (+)
G119245 stl2 other upstream 722328 18934673 ~ 18992769 (+)
G119952 nat14 other downstream 16570 19702099 ~ 19703788 (+)
G120059 grl1 other downstream 238543 19924072 ~ 19928477 (+)
casp2 LOC106605831 other downstream 333170 20018602 ~ 20030933 (+)
zyx zyx other downstream 460204 20145710 ~ 20165887 (+)

Expression


Co-expression Network