G120275


Basic Information

Item Value
gene id G120275
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20378838 ~ 20862364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU138807
CTTAGTTATCTATCCACCTCGTTCCTTTCTTTTAGCATGCGCACATAGTAAGTATGCCATCATGCTTTTGGGATatgtgtcttttcagattccacaatgattcttaAGTTGTGGACATTAGATcactacactccctctcttctttgtttctggacattacatcaccacactccctctcttctttgttgtgatcattacatcactacactccctctcttctttgttgtgatcattacatctccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatctccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtgatcattacatctccacactccctctcttctttgttgtggtcattacatcactacactccctctcttctttgttgtgatcattacatctccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtgatcattacatcaccacactccctctcttctttgttgtggtcattacatctccacactccctctcttctttgttgtgatcattacatctccacactccctctcttctttgttgtgatcattacatctccacactccctctcttctttgttgtgatcattacatctccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtgatcattacatcaccacactccctctcttctttgttgtgatcattacatctccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggacattacatcaccacactccctcccttctttgttgtggtcattacatcaccacacttcctctcttGGTCTTGGTCCTcctctttgtaagtcaccttgattttgcac
>TU138813
tctccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtgatcattacatcactacactccctctcttctttgttgtgatcattacatctccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtgatcattacatcaccacactccctctcttctttgttgtgatcattacatcaccacactccctctcttctttgttgtggtcattacatcactacacttcctctcttctttgttgtgatcattacatcactacactccctctcttctttgttgtggtcattacatcactacacttcctctcttctttgttgtggtcattacatcactacactccctctcttctttgttgtggtcattacatctccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttcgttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacacttcctctcttctttgttgtggtcattacatcaccacacttcctctcttctttgttgtggtcattacatcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138807 False 981 lncRNA 0.42 3 20378838 20391636
TU138813 True 726 lncRNA 0.43 2 20387473 20862364

Neighbor

gene id symbol gene type direction distance location
LOC110509646 NA coding upstream 6815 20364572 ~ 20372023 (+)
LOC110509663 LOC100194563 coding upstream 14626 20362226 ~ 20364212 (+)
plekhg6 LOC106605732 coding upstream 24992 20338252 ~ 20353846 (+)
LOC110509528 tnr1a coding upstream 41165 20326378 ~ 20337673 (+)
LOC110509548 LOC106575195 coding upstream 68063 20298486 ~ 20310775 (+)
erfl3 LOC106576393 coding downstream 37840 20900204 ~ 20977481 (+)
LOC110509768 LOC106576258 coding downstream 127767 20990131 ~ 21058856 (+)
LOC110509817 LOC106576382 coding downstream 212876 21075240 ~ 21103699 (+)
LOC110509776 LOC106576357 coding downstream 243136 21105500 ~ 21136731 (+)
LOC110534415 grik5 coding downstream 285958 21148322 ~ 21311249 (+)
G120272 NA non-coding upstream 21696 20356751 ~ 20357142 (+)
G120271 NA non-coding upstream 22497 20356128 ~ 20356341 (+)
G120270 lag-3 non-coding upstream 22858 20355631 ~ 20355980 (+)
G120269 lag-3 non-coding upstream 23269 20355181 ~ 20355569 (+)
G120462 NA non-coding downstream 1123 20863487 ~ 20863881 (+)
G120464 NA non-coding downstream 4439 20866803 ~ 20867105 (+)
G120465 NA non-coding downstream 5209 20867573 ~ 20867824 (+)
G120466 NA non-coding downstream 5655 20868019 ~ 20868336 (+)
G120468 NA non-coding downstream 8601 20870965 ~ 20871219 (+)
G120259 NA other upstream 58582 20319739 ~ 20320256 (+)
LOC110537348 LOC106575899 other upstream 194213 20179254 ~ 20185414 (+)
G120211 NA other upstream 207457 20171082 ~ 20171381 (+)
zyx zyx other upstream 221728 20145710 ~ 20165887 (+)
casp2 LOC106605831 other upstream 353855 20018602 ~ 20030933 (+)
LOC118938333 LOC106605563 other downstream 679733 21532987 ~ 21547038 (+)
G121677 NA other downstream 723057 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 958850 21821165 ~ 21825285 (+)

Expression


Co-expression Network