G120277


Basic Information

Item Value
gene id G120277
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20385933 ~ 20858679 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU138817
tctttgttgtggacattacatcaccacacttcctctcttctttgttgtggtcattacatcaccacacttcctctcttctttgttgtgatcattacatcactacactccctctcttctttgttgtgatcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtgatcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtgatcattacatctccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtgatcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttctggtcattacatctccacactccctctcttctttgttgtgatcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacacttcctctcttctttgttgtgatcattacatcaccacacttcctctcttctttgttgtggtcattacatcactacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccac
>TU138818
tctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcactacacttcctctcttctttgttgtggtcattacatcaccacacttcctctcttctttgttgtggtcattacatcactacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccacactccctctcttctttgttgtggtcattacatcaccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138817 False 825 lncRNA 0.43 2 20385933 20858679
TU138818 True 255 lncRNA 0.50 2 20855267 20858679

Neighbor

gene id symbol gene type direction distance location
LOC110509646 NA coding upstream 13910 20364572 ~ 20372023 (+)
LOC110509663 LOC100194563 coding upstream 21721 20362226 ~ 20364212 (+)
plekhg6 LOC106605732 coding upstream 32087 20338252 ~ 20353846 (+)
LOC110509528 tnr1a coding upstream 48260 20326378 ~ 20337673 (+)
LOC110509548 LOC106575195 coding upstream 75158 20298486 ~ 20310775 (+)
erfl3 LOC106576393 coding downstream 41525 20900204 ~ 20977481 (+)
LOC110509768 LOC106576258 coding downstream 131452 20990131 ~ 21058856 (+)
LOC110509817 LOC106576382 coding downstream 216561 21075240 ~ 21103699 (+)
LOC110509776 LOC106576357 coding downstream 246821 21105500 ~ 21136731 (+)
LOC110534415 grik5 coding downstream 289643 21148322 ~ 21311249 (+)
G120272 NA non-coding upstream 28791 20356751 ~ 20357142 (+)
G120271 NA non-coding upstream 29592 20356128 ~ 20356341 (+)
G120270 lag-3 non-coding upstream 29953 20355631 ~ 20355980 (+)
G120269 lag-3 non-coding upstream 30364 20355181 ~ 20355569 (+)
G120462 NA non-coding downstream 4808 20863487 ~ 20863881 (+)
G120464 NA non-coding downstream 8124 20866803 ~ 20867105 (+)
G120465 NA non-coding downstream 8894 20867573 ~ 20867824 (+)
G120466 NA non-coding downstream 9340 20868019 ~ 20868336 (+)
G120468 NA non-coding downstream 12286 20870965 ~ 20871219 (+)
G120259 NA other upstream 65677 20319739 ~ 20320256 (+)
LOC110537348 LOC106575899 other upstream 201308 20179254 ~ 20185414 (+)
G120211 NA other upstream 214552 20171082 ~ 20171381 (+)
zyx zyx other upstream 228823 20145710 ~ 20165887 (+)
casp2 LOC106605831 other upstream 360950 20018602 ~ 20030933 (+)
LOC118938333 LOC106605563 other downstream 683418 21532987 ~ 21547038 (+)
G121677 NA other downstream 726742 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 962535 21821165 ~ 21825285 (+)

Expression


Co-expression Network