XLOC_002100


Basic Information

Item Value
gene id XLOC_002100
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22253344 ~ 22273862 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005885
TGGTGGACaggagatgcagagaggagttgaccacaagaGCGGGGTTCAAGCCTGGTAAAGAACTGTTcctgaaagcaggCAAGAGAAGTTAAAAGAAGAGCCATAATGAGGAAAGGACTTGTATGCCCAGTGTGTTGTATAAATTCACAGGAAGCTCAGGTCTGAATCCCTAGAGTGAGGTTAGACAACCTGGTACTCATTTATTCCCTCCggcattcatttatttgctctCTTTCTTTGATTCTGCAGtctttctctctccatctctgtCTCTCTCGCTTCTGCCAgcttgttttctctctctctttctctctctgactCAGGCATGAATAATTCAAAATGACTGGGCAAATTCACCTGGCGTCTCAATTATCACTTATGTTTTTCCTCTGGTGTCGTTTCTGCTCTTGGTTTCTCTAGCAGTGCTTCTTCTGGGGCGATTCAACGGTCTCTGTTCCCTGACCCCCTCATATCATCCCATGCTGCTTCAGTAAAGATGAACAGCACTTTACTTTCTCGTCTATTTAAACTCTGACAGCGTCTGGTCTCTTCATCCCACGCATCTCTGGACGCCCACGCCAGCACTCTCAAACTCAAGAGTGGAAAATAAACAAGCACGCTATAAACTACAGACAGACCGATTCAGAGCAAGCAAACACTCTTTGATGTCTGAAACAGTagtttgaaaataatataaaactttaggggtttttatattatttattatatactgaAAAGCTCGTCTGaagctttttattttaaggaTCTAAAGGTTAAACACTTGGAAAAAGTCAATTATTGGTAATTAACATTTGTGCAGAGTAAGAGTTTTGCTATTAAAGAGTTGCAACAGTGGCTGTGAAAATGTCACATTTAAGATTTATCAGTATTTAGGAAGATTCTTTGAAACTGgagttttgatttaaaaacagGCTATGAGCTGCTAATCTAATACAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005885 True 957 lncRNA 0.40 2 22253344 22273862

Neighbor

gene id symbol gene type direction distance location
XLOC_002098 NA coding upstream 114004 22134533 ~ 22139340 (+)
XLOC_002097 npm1a coding upstream 208225 22034477 ~ 22045119 (+)
XLOC_002096 kcnip1b coding upstream 221423 22003750 ~ 22031921 (+)
XLOC_002095 BX005027.1 coding upstream 272679 21980547 ~ 21980665 (+)
XLOC_002094 NA coding upstream 303936 21936278 ~ 21949408 (+)
XLOC_002101 NA coding downstream 2051 22275913 ~ 22279448 (+)
XLOC_002102 NA coding downstream 99439 22373301 ~ 22377028 (+)
XLOC_002103 nlgn2b coding downstream 107940 22381802 ~ 22478129 (+)
XLOC_002104 gigyf1b coding downstream 236418 22510280 ~ 22533793 (+)
XLOC_002105 efnb3a coding downstream 262831 22536693 ~ 22606468 (+)
XLOC_002093 NA non-coding upstream 308000 21917877 ~ 21945344 (+)
XLOC_002092 NA non-coding upstream 309259 21914635 ~ 21944085 (+)
XLOC_002106 NA non-coding downstream 346468 22620330 ~ 22621291 (+)
XLOC_002110 NA non-coding downstream 560449 22834311 ~ 22838481 (+)
XLOC_002111 AL807389.1 non-coding downstream 573410 22847272 ~ 22847404 (+)

Expression


Co-expression Network