XLOC_021000 (si:ch211-246m6.5)


Basic Information

Item Value
gene id XLOC_021000
gene name si:ch211-246m6.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 14178813 ~ 14272699 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041296
GTGGTTTACTGTTTgcattcagcattgtttttcgAACCGTAACGCTATAAAAGACCCGCAACCCGTCAGGTCAGGCACATTAATCGAGTTATTAAGTTCTTTGAGAATTTTTGTACAGCAAAAAATGTCCTAATTGGAAGCGTATTTGAGGGCAATGTACAGAAACATGCCCCACGGAAAAGCTATTTCACCTAATTTAACGCAGAAACAATAATCTTTTCTCCATCTTAGCTCCATTAAATTACCTTTTTCTGAGCCTTTCGTCCGTTTGTTTCACTAGGGAGACCCTACAAGTGTCCTCCTACTCTCCAGTTAATTGAGGGCTTCTGACTCCAAGTGCCCCTTCACTCCTCAAGACAGctgactgtaaacacacacacacacacacacacacggagaaaaaaaatggttcaAGACTCCTCTTACTACCCATAAATTAACGACAATATGTTGTTCGCAAGGAAACTTCCCTAGTCTTGGGAGGAACACATGTCAACATCAGGAGCCGCGTGTTCAAACTTTGTTTTGTGTGGAACCTAAAACTCGGCAAAACTTTCCGATGGGATTCCCGTGGACGCTCGAGCAGCTGTGACTCAAACATGGATCTTTTGAAAGTCTTTTTAAAGTCATCTGCCTGCATCTGGTGCTTGAGTTTGCTGCCTGTGAAGTTACTTGCGCAGCTGGCTCCAGAGTGCTATCCGGGTGGATACAGGACGTTGAGGAACGCATATCGAAGCGTTGATTTCGACTCCACTGAACTTCAAAACACAGCCATACAGGAGCTGATTTGTGATCATTCATTGCCGCCAGGATGGTACCGATTTTCCATTAACAATAAACCAGCAGAAATGCCAACCCGCTGCGTTGAGATGAACCGCTGTGGTACACAGGCTCCAGTGTGGTTGTCTCTTAAGGACAGCTCTCTGCCGAGGCCTGGAGAGGTTAAGCAGCTTTCGGCTTGTGCAACATGGCAGTTCTTCCACGGAAGCACTAAAGATTGCTGTCTTTTCCGGATCCCGATCTCAGTCCGCAACTGTGGAGAGTTCCTGCTATACTTCCTACAGCCGACTCAAGGTTGCATGGGATACTGTGCAGAAGttgtttcaCCATACACCCGTAAATCCTGCCCACCTGGTGAAACTGAAGTCAACGGTGTGTGTAAAGCGAACGTCCCCTCTTTACCCTCTAAACCGGTGGTTTCGGCTGAGCTGGTGGGCAGCAGCGTCCATCTGCGCTGCTCTTTCCCTGGGGTGTTGTCCGTGTGGCCGCTGGGCTTTCAGGTGGTGTGGGCCCGATACTCCTCCAACACCATGAAGGTGGAGATCAGACGAGAAACCACCACTCGACTCTACTCACTGGCAGAAATGGACGGACTGCACTTCAGACTCGGAGAAACGTTCTCCTGCAGTGTCTCTACCTTCCTGCTAAACTCCTCCAGCTCACAGTCGGCCTCCAAAGAGAGCGTCGGTTTTTTTGCAGGAATTAAGTTTGTTCCAGATGTCCTGCAGATTCGCGAAGATGCCAGAAAGCATGTTTTGACCGTTCACAGCACGGTCCCCATACCCTGCCATGGGTTTGAACACAACCGCCGCTGCAAAGTGGCCCTCGCTCTCAGTGTGCGGGAGTCAGACAGTGTAGTGGTGGAGGTGTCAAACGTGGCCTTGTCATCCTGCGTTGTGGAGCTACTGTCCCAGCCCTGTCGAAGCAGCGTCTGCGCTCAGGCCACTGTGACGCTCACCGCTGTTACCGATTTCACTCGGGATGGGAACCGGGTCAGTTTTCTGTCCGCTCAGCCCATTGAAGGAAGTCCTCGCCTCTGGAGGGGTTACAACCCACCACCGCTGAAGATCACAGTTCAAGATGTTCCAACAGCGACCTGTTACTCCCTGACTGACCCTCACATCATTACTTTTGATGGCAGGCGGTACGAGAACCAGCAAACAGGCACATTTTTGCTTTATAAGAGCACAAAGCGTGTGTTCGAGGTCCACACGAGGCAGTGGGATTGTGGAAGCCGGCATTACGCCGTGGCTTGTACCTGTGGAGTGGCTGCTCGAGAGGGCAATGAGGTTTTGACCTTTGATATGTGCAATGGGCAGCTGCAGGAAACACGTCCACACTTGTCTGTCAAGGTCTTAGGAGCATCCGTGAGAAACCGGATTAAGATCCACGAGACGCATCAAGGGAAGAAAGTCACGATGGTTTTTGCCTCAGGTGCGTTTGTGAGAGCAGACGTCAGCGATTGGGGAATGAGTCTGTCCGTCAGGGCTCCAAGTCAGGACTTTAATGCCACCAGAGGCCTGTGCGGGTTATTTGACCGGAACAGCCACAATGACCTCCATCATCCTGCAGGCACAAGCTCTCGTGACAAAGACCTAGTGGAATTCATTGAAGGCTGGAGGATCGCGCCTGGGGAGAGCCTGTTTGACAGCACGCCACCTGCCGTGGATGAGGAGATAAAGTGGAATTTCTGTGCTTGTCAAAAGGGATACAGCCTGTCCCTCCATTCAACACGCGCCTCAGAAGGCCTATTAAACCCACCTCCTGTCTCTCGCTGCCTATCTTACGACAACACAGATTACACGTCCCTGTTCCCCTTCAAAGACGCCACTGCTGAGTATGCTGTTAAACCCTTCTCCACCCGTAACGTCCAGAAGCGGGAGGCTTTGGCTAAAGCATCAGAGTTAACCAAGATGAAAGGTGCTAAACTGAAGTCTCAGTTGTCCAGTGGTTTGGCAGACAACTCTCTCTCTGTCAGGGAATTGGAATTGGACTCATTATTTAAAGTTCACAATCCTCACTTGAATGAATCTAAGGTACCCTCACCAAGGCTAAAGAGACAAACCCTTGACTTTCAGCCTGTTTACACCTTCCAGGCTCTAAGCCAGACTGACCTCGAAAGTTTCGCCTACTTCTTTCCAGATGACCACCGCTCTTCCAGCCGTCCAGCTGCCCACCCTTCCTGGCCGACACCTAGCGGTCTCACTTCTGCCAAAGCTTTGGAGGTCTGCCAATCGACCTTGGCCAACTCAACCGTGGGCACGGTATGTAAGAGTCTGCTGGGTCGGCGCCTGGAAGAAGCTGTGGATCTCTGCATCCTGGATCTTCAGTTGAAAGATGATTTGGCTTGGGAGGACGCACTCGTGCCCTTCCTGGAAAACGAATGTGAGCGAAAATGGCTGGAGAACCGGAGCCAGAGTTCTCAAGAAGCTTCCAAATCTTTGGCAGATATTGCAATGGCCCTGCGTTGTCCGAACTTTTGTAATGGGAACGGGCAATGTGTAGAGTGGGGATGTCAGTGTTATCCAGGCTACAGCTTTTACGACTGCAGTCTCACAATCAgtcaGCCAGTAGAAGTCACTGATCTGGAGAATGGCGGTTTGTGTGACGTCCGTGAGTTCGACTGTGACAGCGTGAGAGTTTTTGGACTGGGTTTCATCGACTCCTCCGACCTTGCTTGTCTTGTTATAAGACTGAAGCATGCAAACGGAGTTTGGATCCCTGAAGAGGAAGGCAGAACCAAAGCGTCCTTCCTGAGCTCTAAAGCGGTCGATTGCTCCGTCCCACGAATCACCAACATGGCCGTCGACACGATGGACTTTACAGCCAGCGAGCAGCCCTACGCCAGATGGGAGATAAAGGTGACTAATGATGGACAGCAGTACAGCGATGGCAAGATTTTAACCCTTTATGATGGTATTTGCCAGATATGTGTGGCTCCTTCTGGAATTTGTAAACTTAAGGAGAAGACGTGTAATATAGATGGGATGTGTTTTGCTGATGGAGATTCCAGCCCCTCCATTCCGTGTCTCCTGTGTAACTCCACTGCCTCGAAATACACCTGGTCCATTAATCAAGCTAATCGTCCACCGAGCCTCCAAGCACCACAGGACGTCCTGCAGACCTTTGTAGGGGAGAACTTTGTGTACCAGTTGACAGCCGTGGACCCCGAGGGCTCAGCCTTGCTCTTCCAGCTGGAGTCGGGACCCCGCGGGGCCTCCATCTCCCCAGCCGGACTGCTCATCTGGACGGTTCGGGAGGAGCAGACGCACAGTTTCCGGTTCAGTGTGACTGATGAGTGTGACGCGCAGAGCACATTCACTACTGAGGTGCATGTTCGGCCATGCGTCTGTATGAACGGAGGGTCGTGTGTGACCAACATCAGGTTTCCAGCGGGCAGTGGCGAGTACCTCTGCATATGCCCATCTGGTTTCCATGGCGACCACTGCCAGGACAGGCTGAACGAGTGTGACTCGAGCCCATGTGGAGCAGGAGTGTGCGAGGATCTGACAGACGGCTTCCAGTGCCACTGTCCTGCTGGACTCACAGGTGTCACATGTCGGGAtgatgtgaatgagtgtgagcgAAGGCCATGTTTCCCTGGTGTCAGGTGTGTGAACGTGTTCGGCTCCTTCAGCTGCAGCTCCTGTCCTCGGGGCCTGGAGGGAAATGGGATCTCCTGCAAAGCATGCAGAAATACAACAGAGCTGGATCTGCCGTCCCGCTTTGATTATGACCAGCAGAACCATGGGAGGGAGAGCAATACAATCCAGATGGCACTAGATAGTTATCCACCTCGTGCACACGCAGACAACTATGCCAGACTCTGCTCTTGTCCTGAGATAATTGGTAAAACAGCTCCTTGCAGTTTCCACGTGGAGAGAAAAAGAGTGCAGAACTTCTCAGGTCTCAGGTGTGCAGCTTTTCTGACAAGGCGAAAAGACCGAACATTTCAGAGTGAGAGAAATTGTTAGGTAGATGTTGCGCGAAGCCAAAAATGGCACAAAATGTTTGCCTAATGCAAGACAGCAGTCCTAAAAATAGAAACAAAGTGGCAAAGGGGGTTATCGATCGTACAGATTTTCACTTTGCTGCACTTTTCCAGCTAAAACTCAAATCACAAAACTAATAATCATCAGATAGCGTGTTGTTCAGAATTTATTGTATGTATATTGaactgtgatttttaaaatttgatgtgtttttaaaacagagcatgtttgttataaagacagtaaaattgctgtCATTCTTAACATTTCTATAATAACCACGACCGCATGGTCAGTAAACGCACATATATATGTCTGTGTGGgtgtactgcaaacagcatttttgttagactcatcatttcagaaaggcttgaataaacgcCACcgcaaatatatgaaataaacttataaaataaACTTGGTATGCTTGACTAATGagttgtatttcagcttcatccaag
>TCONS_00041297
TGTCCCAGCCCTGTCGAAGCAGCGTCTGCGCTCAGGCCACTGTGACGCTCACCGCTGTTACCGATTTCACTCGGGATGGGAACCGGGTCAGTTTTCTGTCCGCTCAGCCCATTGAAGGAAGTCCTCGCCTCTGGAGGGGTTACAACCCACCACCGCTGAAGATCACAGTTCAAGATGTTCCAACAGCGACCTGTTACTCCCTGACTGACCCTCACATCATTACTTTTGATGGCAGgtcaGCCAGTAGAAGTCACTGATCTGGAGAATGGCGGTTTGTGTGACGTCCGTGAGTTCGACTGTGACAGCGTGAGAGTTTTTGGACTGGGTTTCATCGACTCCTCCGACCTTGCTTGTCTTGTTATAAGACTGAAG
>TCONS_00041298
AACGTGGCCTTGTCATCCTGCGTTGTGGAGCTACTGTCCCAGCCCTGTCGAAGCAGCGTCTGCGCTCAGGCCACTGTGACGCTCACCGCTGTTACCGATTTCACTCGGGATGGGAACCGGGTCAGTTTTCTGTCCGCTCAGCCCATTGAAGGAAGTCCTCGCCTCTGGAGGGGTTACAACCCACCACCGCTGAAGATCACAGTTCAAGATGTTCCAACAGCGACCTGTTACTCCCTGACTGACCCTCACATCATTACTTTTGATGGCAGGCGGTACGAGAACCAGCAAACAGGCACATTTTTGCTTTATAAGAGCACAAAGCGTGTGTTCGAGGTCCACACGAGGCAGTGGGATTGTGGAAGCCGGCATTACGCCGTGGCTTGTACCTGTGGAGTGGCTGCTCGAGAGGGCAATGAGGTTTTGACCTTTGATATGTGCAATGGGCAGCTGCAGGAAACACGTCCACACTTGTCTGTCAAGGTCTTAGGAGCATCCGTGAGAAACCGGATTAAGATCCACGAGACGCATCAAGGGAAGAAAGTCACGATGGTTTTTGCCTCAGGTGCGTTTGTGAGAGCAGACGTCAGCGATTGGGGAATGAGTCTGTCCGTCAGGGCTCCAAGTCAGGACTTTAATGCCACCAGAGGCCTGTGCGGGTTATTTGACCGGAACAGCCACAATGACCTCCATCATCCTGCAGGCACAAGCTCTCGTGACAAAGACCTAGTGGAATTCATTGAAGGCTGGAGGATCGCGCCTGGGGAGAGCCTGTTTGACAGCACGCCACCTGCCGTGGATGAGGAGATAAAGTGGAATTTCTGTGCTTGTCAAAAGGGATACAGCCTGTCCCTCCATTCAACACGCGCCTCAGAAGGCCTATTAAACCCACCTCCTGTCTCTCGCTGCCTATCTTACGACAACACAGATTACACGTCCCTGTTCCCCTTCAAAGACGCCACTGCTGAGTATGCTGTTAAACCCTTCTCCACCCGTAACGTCCAGAAGCGGGAGGCTTTGGCTAAAGCATCAGAGTTAACCAAGATGAAAGGTGCTAAACTGAAGTCTCAGTTGTCCAGTGGTTTGGCAGACAACTCTCTCTCTGTCAGGGAATTGGAATTGGACTCATTATTTAAAGTTCACAATCCTCACTTGAATGAATCTAAGGTACCCTCACCAAGGCTAAAGAGACAAACCCTTGACTTTCAGCCTGTTTACACCTTCCAGGCTCTAAGCCAGACTGACCTCGAAAGTTTCGCCTACTTCTTTCCAGATGACCACCGCTCTTCCAGCCGTCCAGCTGCCCACCCTTCCTGGCCGACACCTAGCGGTCTCACTTCTGCCAAAGCTTTGGAGGTCTGCCAATCGACCTTGGCCAACTCAACCGTGGGCACGGTATGTAAGAGTCTGCTGGGTCGGCGCCTGGAAGAAGCTGTGGATCTCTGCATCCTGGATCTTCAGTTGAAAGATGATTTGGCTTGGGAGGACGCACTCGTGCCCTTCCTGGAAAACGAATGTGAGCGAAAATGGCTGGAGAACCGGAGCCAGAGTTCTCAAGAAGCTTCCAAATCTTTGGCAGATATTGCAATGGCCCTGCGTTGTCCGAACTTTTGTAATGGGAACGGGCAATGTGTAGAGTGGGGATGTCAGTGTTATCCAGGCTACAGCTTTTACGACTGCAGTCTCACAATCAgtcaGCCAGTAGAAGTCACTGATCTGGAGAATGGCGGTTTGTGTGACGTCCGTGAGTTCGACTGTGACAGCGTGAGAGTTTTTGGACTGGGTTTCATCGACTCCTCCGACCTTGCTTGTCTTGTTATAAGACTGAAG
>TCONS_00041299
CCCCTCTTTACCCTCTAAACCGGTGGTTTCGGCTGAGCTGGTGGGCAGCAGCGTCCATCTGCGCTGCTCTTTCCCTGGGGTGTTGTCCGTGTGGCCGCTGGGCTTTCAGGTGGTGTGGGCCCGATACTCCTCCAACACCATGAAGGTGGAGATCAGACGAGAAACCACCACTCGACTCTACTCACTGGCAGAAATGGACGGACTGCACTTCAGACTCGGAGAAACGTTCTCCTGCAGTGTCTCTACCTTCCTGCTAAACTCCTCCAGCTCACAGTCGGCCTCCAAAGAGAGCGTCGGTTTTTTTGCAGGAATTAAG
>TCONS_00041300
CTCCAGAGTGCTATCCGGGTGGATACAGGACGTTGAGGAACGCATATCGAAGCGTTGATTTCGACTCCACTGAACTTCAAAACACAGCCATACAGGAGCTGATTTGTGATCATTCATTGCCGCCAGGATGGTACCGATTTTCCATTAACAATAAACCAGCAGAAATGCCAACCCGCTGCGTTGAGATGAACCGCTGTGGTACACAGGCTCCAGTGTGGTTGTCTCTTAAGGACAGCTCTCTGCCGAGGCCTGGAGAGGTTAAGCAGCTTTCGGCTTGTGCAACATGGCAGTTCTTCCACGGAAGCACTAAAGATTGCTGTCTTTTCCGGATCCCGATCTCAGTCCGCAACTGTGGAGAGTTCCTGCTATACTTCCTACAGCCGACTCAAGGTTGCATGGGATACTGTGCAGAAG

Function

symbol description
si:ch211-246m6.5 Predicted to enable calcium ion binding activity.

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-577 Predicted to enable calcium ion binding activity.

Ensembl:

ensembl_id ENSDARG00000103750

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041296 False 5233 mRNA 0.50 20 14178813 14272699
TCONS_00041297 False 372 nonsense_mediated_decay 0.53 3 14223121 14247242
TCONS_00041298 False 1827 mRNA 0.52 6 14223121 14247276
TCONS_00041299 False 316 mRNA 0.56 2 14251343 14255659
TCONS_00041300 True 414 mRNA 0.50 2 14260154 14262115

Neighbor

gene id symbol gene type direction distance location
XLOC_020999 si:ch211-246m6.5 coding downstream 17504 14145510 ~ 14161309 (-)
XLOC_020998 si:ch211-246m6.4 coding downstream 50097 14127472 ~ 14128716 (-)
XLOC_020997 aox5 coding downstream 63497 14083729 ~ 14115316 (-)
XLOC_020996 BX649296.1 coding downstream 159091 14019604 ~ 14019722 (-)
XLOC_020995 BX649510.1 coding downstream 232746 13945953 ~ 13946067 (-)
XLOC_021001 NA coding upstream 3047 14275746 ~ 14298602 (-)
XLOC_021002 NA coding upstream 27101 14299800 ~ 14301873 (-)
XLOC_021003 si:ch73-338d8.5 coding upstream 31978 14304677 ~ 14309817 (-)
XLOC_021004 NA coding upstream 59751 14332450 ~ 14334135 (-)
XLOC_021005 si:dkeyp-122a9.1 coding upstream 65479 14338178 ~ 14346575 (-)
XLOC_020993 CT990618.1 non-coding downstream 462228 13711434 ~ 13716585 (-)
XLOC_020992 NA non-coding downstream 485186 13668985 ~ 13693627 (-)
XLOC_020990 NA non-coding downstream 571250 13606281 ~ 13607563 (-)
XLOC_021008 CR352252.1 non-coding upstream 420413 14693112 ~ 14693228 (-)
XLOC_021009 BX936391.1 non-coding upstream 492299 14764998 ~ 14787062 (-)

Expression


Co-expression Network