G120450


Basic Information

Item Value
gene id G120450
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20831499 ~ 20838492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU139035
agatcacaaagcagagtgtgctaggcagagagagagagagagggagatcacaaagcagagtgtgctaggcacagagagagagcgagagagagagagagggagatgacaaagcagagtgtgctaggcacagagagagagagagagagggagatgacaaagcagagtgtgctaggcacagagagagagagagagagggagatgacaaagcagagtgtgctaggcacagagagagagagagagagagggagatgacaaagcagagtgtgctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagagagagggagagtacaaAGCAGAGTGttctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagaaagggagatcacaaagcagagtgtgctaggcagagagaaagggagagcacaaagcagagtgttctaggcagagagagagggacagggagagcacaaagcagagtgtgctaggcagagagagggagatcacaaagcagagtgtgctaggcagagagatagggagagggagatcacaaagcagactgctaggcagagagaaagggagagggagatcacaaagcagagagtgagggagagcacaaagcagagtgtgctaggctgagagagagggagagcacaaagcagagagagagggagatcacaaagcagagtgtgctaggcagagagagagggagagcacaaagcagagcgtgctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagagagagggagggagagcacaaaGCAGAGCGTGCTaggcagagagtgagggagagggagagcacaaatcagagtgtgctaggcagagagagagggagatcacaaagcagagtgtgctaggcagagagagagggagatcacaaagcagattgtgctaggcagagagagagggagagcacaaaTCAGAGTGTgctatgcagagagagagggagatcacaaagcagagtgtgctaggcagagagtgagagagagggagagcacaaagcagagtgtgctaggcagagagtgagggagagggagagcacaaatcagagtgtgctaggcagagagagggggagatcacaaagcagagtgtgctagtcagagagagagggagagggagagcacaaagcagagtgtgctaggcagagagagagggagatcacaaagcagagtgtgctaggcagagagagagggatatcaCAAAGCAGAttgtgctaggcagagagagagggagagcacaaagcagagtgtgctaggcagagagtgagggagagggagagcacaaatcagagtgtgctaggcagagagagagggagatcacaaagcagagtgtgctagtcagagagagagggagagggagagcacaaagcagagtgtgctaggcagagagagagggagatcacaaagcagagtgtgctaggcagagagagagggatatcaCAAAGCAGAttgtgctaggcagagagagagggagagcacaaagcagagtgtgctatgcagagagagagagagatcacaaaacagagtgtgctaggcagagagaaagggagagggagagcacaaaacagagtgtgctaggcagagagaaaggtagagggagagcacaaaacagagtgtgctaggcagagagatagggagagcacaaagcagagtgtgctaggcagagagaaagggagagcacAAAGCagtatgctaggcagagagagagggacagggagatcacaaagcagagtgtgctaggcagagagagagagagagagggagagcacaacgcagagtgtgctaggcagagagagagagagagatcacaaagCAGAgcgtgctaggcagagagatagggagagggagatcacaaagcagagtgtgctaggcagagagagagagagatcacaaagCAGAgcgtgctaggcagagagagagggagatcacaaagcagagtgtgctaggcagagagagagggagagtacaaagcagagtgtgctaggcagagagagagggacagggagatcacaaagcagagtgtgctaggcagagagagagagagggagagcacaacgcagagtgtgctaggcagagagagagagagagatcacaaagCAGAgcgtgctaggcagagagatagggagagggagatcacaaagcagagtgtgctaggcagagagagagagagatcacaaagCAGAgcgtgctaggcagagagagagggagatcacaaagcagagtgtgctaggcagagagagaaggggggaggttAAGGGTCAAGCAGCAATCCCTTGAATTGAGAGCCAATTACATTAATTGTAATCTAGATTTAAAGCAGACAGCTAcagctgtgacacacacacacactacacaccatgtGTAGACAGAGAGGAGCACTTAGGCAGACAGACAAAAGACAGGATGCATTCTGGTTCTGTAACCTGCGTTGTGTGGAtgcttgtgtgtgagagagggttgAGGTGTAAGTGTACTGTTTGTATa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139035 True 2618 lncRNA 0.52 3 20831499 20838492

Neighbor

gene id symbol gene type direction distance location
LOC110537492 LOC106605858 coding upstream 136069 20679841 ~ 20695430 (+)
LOC110537453 atn1 coding upstream 182226 20629126 ~ 20649273 (+)
LOC110537439 LOC106576545 coding upstream 203017 20615636 ~ 20628482 (+)
LOC110537428 mlf2 coding upstream 219019 20608551 ~ 20612480 (+)
wnt4b wnt4b coding upstream 235651 20585309 ~ 20596873 (+)
erfl3 LOC106576393 coding downstream 61712 20900204 ~ 20977481 (+)
LOC110509768 LOC106576258 coding downstream 151639 20990131 ~ 21058856 (+)
LOC110509817 LOC106576382 coding downstream 236748 21075240 ~ 21103699 (+)
LOC110509776 LOC106576357 coding downstream 267008 21105500 ~ 21136731 (+)
LOC110534415 grik5 coding downstream 309830 21148322 ~ 21311249 (+)
G120425 NA non-coding upstream 35203 20791245 ~ 20796296 (+)
G120418 NA non-coding upstream 71753 20759358 ~ 20759746 (+)
G120402 NA non-coding upstream 95160 20735740 ~ 20736339 (+)
G120462 NA non-coding downstream 24995 20863487 ~ 20863881 (+)
G120464 NA non-coding downstream 28311 20866803 ~ 20867105 (+)
G120465 NA non-coding downstream 29081 20867573 ~ 20867824 (+)
G120466 NA non-coding downstream 29527 20868019 ~ 20868336 (+)
G120468 NA non-coding downstream 32473 20870965 ~ 20871219 (+)
G120169 NA other upstream 412371 20407862 ~ 20419128 (+)
G120259 NA other upstream 511243 20319739 ~ 20320256 (+)
LOC110537348 LOC106575899 other upstream 646874 20179254 ~ 20185414 (+)
G120211 NA other upstream 660118 20171082 ~ 20171381 (+)
zyx zyx other upstream 674389 20145710 ~ 20165887 (+)
LOC118938333 LOC106605563 other downstream 703605 21532987 ~ 21547038 (+)
G121677 NA other downstream 746929 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 982722 21821165 ~ 21825285 (+)

Expression


Co-expression Network