XLOC_021001


Basic Information

Item Value
gene id XLOC_021001
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 14275746 ~ 14298602 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042362
GGAGAACAGGGACATGAAAACCACAGGAAGAGCGAGAGAGATTACAAACTAAATGTATTCACCAAAGATCCTGAAAATTGATGATATGCAGAGAACCTACACATATACCGACTCTCATGTTACATACGATGATTCACTCTCTGCTGTGGATTGTTTGGAAAATGGAAATGTTTGTCGgagcaacaacaactgcaaacTCTGTGAGGAAACACCATTATATCCACCATATGTCCCAGCTATTCGTCCTCAAATATGGACAATTAACTCCCATAGTTTTGTCAAATTTCAGACCACAGCACCACTCCTTCATCACAACTTCTGGAGATCTTCTATTCAAATTCCCGGCTTAAAGGAAAAGCCCATCCTGAAGACGAATGAAGTTTTTTTCAACCCAAGTCCAAAGGCTCCCCCTTGGCATGAGGTCTGCACTTTAATCCAACAGCTTGAGAGGGAATGACAGCCGAAGACTTTCGCCAAAGCTAGTTCATGACAGGAACCTCGACTTCTGCTCTGGCCAGACTGCAAGCATTACAAGCGGATATAACGGCTCAAACTTCAGCCCTCTCACCCTCATCCAGGTGGCATCCGAGTTGCTCCATGCCAAGGGATTGAGAGGGATCTACACAATTGGACAGTCAGGAATTTGGTTTGGAAATGAACAagcccagagagagagagagagatgaggtgTTGACTTGAAGTTTTGAGACCGAAAGCTGGATGCTTTCAAGAAGATCTGCTAATATTGAAAACCGACAGAGATTTATGAGGGTGCATTTGCGCAACAGTGTTTTTAACTAAAAGTGAAAAATGTATGCGCGTTTTGTCTTttcctttaaacaaaaacaaagtgcaaagtgcaaaaaaataaaataaaacattgcaatt
>TCONS_00041301
ACGATGATTCACTCTCTGCTGTGGATTGTTTGGAAAATGGAAATGTTTGTCGgagcaacaacaactgcaaacTCTGTGAGGAAACACCATTATATCCACCATATGTCCCAGCTATTCGTCCTCAAATATGGACAATTAACTCCCATAGTTTTGTCAAATTTCAGACCACAGCACCACTCCTTCATCACAACTTCTGGAGATCTTCTATTCAAATTCCCGGCTTAAAGGAAAAGCCCATCCTGAAGACGAATGAAGTTTTTTTCAACCCAAGTCCAAAGGCTCCCCCTTGGCATGAGGTCTGCACTTTAATCCAACAGCTTGAGAGGGAATGACAGCCGAAGACTTTCGCCAAAGCTAGTTCATGACAGGAACCTCGACTTCTGCTCTGGCCAGACTGCAAGCATTACAAGCGGATATAACGGCTCAAACTTCAGCCCTCTCACCCTCATCCAGGTGGCATCCGAGTTGCTCCATGCCAAGGGATTGAGAGGGATCTACACAATTGGACAGTCAGGAATTTGGTTTGGAAATGAACAagcccagagagagagagagagatgaggtgTTGACTTGAAGTTTTGAGACCGAAAGCTGGATGCTTTCAAGAAGATCTGCTAATATTGAAAACCGACAGAGATTTATGAGGGTGCATTTGCGCAACAGTGTTTTTAACTAAAAGTGAAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000099770

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042362 False 888 lncRNA 0.42 4 14275746 14298602
TCONS_00041301 True 686 lncRNA 0.44 3 14275823 14295103

Neighbor

gene id symbol gene type direction distance location
XLOC_021000 si:ch211-246m6.5 coding downstream 3047 14178813 ~ 14272699 (-)
XLOC_020999 si:ch211-246m6.5 coding downstream 114437 14145510 ~ 14161309 (-)
XLOC_020998 si:ch211-246m6.4 coding downstream 147030 14127472 ~ 14128716 (-)
XLOC_020997 aox5 coding downstream 160430 14083729 ~ 14115316 (-)
XLOC_020996 BX649296.1 coding downstream 256024 14019604 ~ 14019722 (-)
XLOC_021002 NA coding upstream 1198 14299800 ~ 14301873 (-)
XLOC_021003 si:ch73-338d8.5 coding upstream 6075 14304677 ~ 14309817 (-)
XLOC_021004 NA coding upstream 33848 14332450 ~ 14334135 (-)
XLOC_021005 si:dkeyp-122a9.1 coding upstream 39576 14338178 ~ 14346575 (-)
XLOC_021006 si:dkeyp-122a9.2 coding upstream 52237 14350839 ~ 14361022 (-)
XLOC_020995 BX649510.1 non-coding downstream 329679 13945953 ~ 13946067 (-)
XLOC_020993 CT990618.1 non-coding downstream 559161 13711434 ~ 13716585 (-)
XLOC_020992 NA non-coding downstream 582119 13668985 ~ 13693627 (-)
XLOC_020990 NA non-coding downstream 668183 13606281 ~ 13607563 (-)
XLOC_021008 CR352252.1 non-coding upstream 394510 14693112 ~ 14693228 (-)
XLOC_021009 BX936391.1 non-coding upstream 466396 14764998 ~ 14787062 (-)
XLOC_021010 NA non-coding upstream 582213 14880815 ~ 14883529 (-)

Expression


Co-expression Network