XLOC_021004


Basic Information

Item Value
gene id XLOC_021004
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 14332450 ~ 14334135 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042364
CCTGATTGTGAATCAACACAAAGacaaagaaaatttttttttttatgctgcaAGGTAGGACACATGATATGAATTTAAGTAGTTTTAAcacaagatgtaaaaaaaaataaataaataaaataataataataataataacaatgcaaaAGGTGCTCATGTTTTTCATCACCAGAAATAATTTTTCTATTGTTTTGCTCTGTAAATATGTTGCTTATAAATGTACTTTACAATGTACttgttaaaatgtataaatatcttCAGCCATCAAATGCTGATTGCTATCTTGGTCATTGCAGGAGATCCATCTATCATTCCAATATAATTTGACCTGCATTTTCTGGACTGGACAGACAGCAGATTGCTATAAACCCTCAACATCATTCAaatttgttgtgtattatttgtttgtttgtttgtttgtttaatatacaTTGTTAGTTTAGAAAATGCAGTCTGCAGGAAGTTTGTCTAGCCTTATTCAGATTTCCAGTCCACTTCAACAACAGGATATTATCACCACTGTAGTGATGATTGTTTTGTTAGTTTCAATGCAGGCATTGATGGATTTCACATTTTCATGCCCATGCAATGGACACTGGAACTGGATTTTATCATCCTGTGCCTTTCTTGCACCTGCTGCCTTTGCTTTCTTTGCATTGTTCATTCTTTTTACACTTTCTAAATGTTCTAAGCAGAACGATGGTAGTATTTCTTGTGCCAAAGCTGTTTTAGTTTCACTCATTCCGGCATACAtttggatctttctgatgtttcTCCATGGTGATTATCTAGCATGTTTACTGACAGACTGGGATGGACAGTATGCCTGTGATACAACACTGCGGCCTGAATGTTTGAATTGGTGCAAACCAGATTCAGCTGATGCATCCTCTGGGGCtgaacagaaacagaaaaaaacacgAAAGTGGATACTGATATCAAAGGTAAGAATTGTGtaggattttttaaaatgcaagttAAACATATAAAATGAAGGGTtcctttatgtaaaaaaaaaacatttataaggataaatacaaatattagtaatacttttattattattattattattattattattattattatggtacaGGCTTGTGCACTTGTTTTAATATACTGATTTATTTACCCCCCTCCCCCGTTTTATCTAGTTAACAGGTTATGCTATGGTCTTCATCTTCTGCATTGCAGCATTCTTTGTGATCTGGTTTGggcggaaaactaaaaaaaacaattcaaatcgTGGACGCCAACAgcgtagtggttagtgcatcaaCACATAACACcgaggtgctcacggcgacctgagttcaattcccggctcaaggtcctttgccgatcattcccctatctctgctcctcATACCCTGTCTCTAATCTCCACTGTCTTATCAGTAATGGTGAAAAccgataaaaaataacaatactaaaaaaaaaacaattcaagcGTACAACATGGTTAAAAATGCATGTATGGACAATTTTTTGAGACATTGAGATGGTCATGCACTGTATGTCGACATGGCAATATTGATGTGTGGGTTTGATGGAATACAAGtattttgtattgtgttttagACATTTTTGTTAAGTATATGTAATCAATTGTTGTGTTGTGTTAGTTTTTTTagttcacttttattttacaacttGCAATTGTTGAAATATGTGTATCTTATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042364 True 1686 lncRNA 0.34 1 14332450 14334135

Neighbor

gene id symbol gene type direction distance location
XLOC_021003 si:ch73-338d8.5 coding downstream 22633 14304677 ~ 14309817 (-)
XLOC_021002 NA coding downstream 30577 14299800 ~ 14301873 (-)
XLOC_021001 NA coding downstream 33848 14275746 ~ 14298602 (-)
XLOC_021000 si:ch211-246m6.5 coding downstream 59751 14178813 ~ 14272699 (-)
XLOC_020999 si:ch211-246m6.5 coding downstream 171141 14145510 ~ 14161309 (-)
XLOC_021005 si:dkeyp-122a9.1 coding upstream 4043 14338178 ~ 14346575 (-)
XLOC_021006 si:dkeyp-122a9.2 coding upstream 16704 14350839 ~ 14361022 (-)
XLOC_021007 lrp1ba coding upstream 29817 14363952 ~ 14739491 (-)
XLOC_021008 CR352252.1 coding upstream 358977 14693112 ~ 14693228 (-)
XLOC_021009 BX936391.1 coding upstream 430863 14764998 ~ 14787062 (-)
XLOC_020996 BX649296.1 non-coding downstream 312728 14019604 ~ 14019722 (-)
XLOC_020995 BX649510.1 non-coding downstream 386383 13945953 ~ 13946067 (-)
XLOC_020993 CT990618.1 non-coding downstream 615865 13711434 ~ 13716585 (-)
XLOC_021010 NA non-coding upstream 546680 14880815 ~ 14883529 (-)
XLOC_021012 NA non-coding upstream 737519 15071654 ~ 15209243 (-)
XLOC_021013 NA non-coding upstream 820009 15154144 ~ 15155315 (-)

Expression


Co-expression Network