G120557


Basic Information

Item Value
gene id G120557
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21172995 ~ 21174078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU139171
ctgcaacagcgtttcccctgtcataacccctcacactagactactgcaacactgtttcccctgtcataacccctcacactagactactgcaacagcgtttcccctgtcataaaccctcacactagactactgcaacactgtttcccctgtcataaaccctcacactagactactgtcataaaccctcacactagactactgcaacagcgtttcccctgtcataaaccctcacactagactactgcaacactgtttcccctgtcataaaccctcacactagactactgacataacccctcacactagactactgcaacactgtttcccctgtcataaaccctcacactagactactgcgacactgtttcccctgtcataaaccctcacactagactactgtcataaaccctcacactagactactgcaacactgtttcccctgtcataaaccctcatactagactactgtcataaaccctcacactagactactgcaacactgtttcccctgtcataaaccctcacactagactactgtcacaacccctcacactagactactgtcataacccctcacactagactactgtcataacccctcacactagactactgtcataacccctcacactagactactgtcataacccctcacactagactactgtcataacccctcacactagactactgacataacccctcacactagactactgtcataacccctcacactagactactgacataacccctcacactagactactgacataacccctcacactagactactgacataacccctcacactagactactgacataacccctcacactagactactgcaacagcatttcccctgtcataaaccctcacactagactactgcaacagcgtttcccctgtcataacccctcatactagactactgcaacactgtttcccctgtcataaaccctcacactagactactgcaacagcgtttcccctgtcataacccctcacactagactactgcaacagcgtttcccctgtcataacccctcacactagactactgcaacagcgtttcccctgtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139171 True 1084 lncRNA 0.36 1 21172995 21174078

Neighbor

gene id symbol gene type direction distance location
LOC110509776 LOC106576357 coding upstream 36264 21105500 ~ 21136731 (+)
LOC110509817 LOC106576382 coding upstream 69296 21075240 ~ 21103699 (+)
LOC110509768 LOC106576258 coding upstream 114139 20990131 ~ 21058856 (+)
erfl3 LOC106576393 coding upstream 195514 20900204 ~ 20977481 (+)
pou2f2a pou2f2 coding upstream 287919 20741051 ~ 20885076 (+)
LOC110537588 NA coding downstream 221086 21395164 ~ 21411507 (+)
LOC110537581 LOC106605559 coding downstream 303564 21477642 ~ 21491358 (+)
LOC110534436 LOC106605563 coding downstream 338262 21512340 ~ 21530893 (+)
LOC118944067 LOC106597946 coding downstream 357170 21531248 ~ 21533013 (+)
LOC118938333 LOC106605563 coding downstream 358909 21532987 ~ 21547038 (+)
G120556 NA non-coding upstream 5442 21166689 ~ 21167553 (+)
G120555 NA non-coding upstream 7730 21165014 ~ 21165265 (+)
G120540 NA non-coding upstream 64654 21108093 ~ 21108341 (+)
G120512 NA non-coding upstream 161230 21007089 ~ 21011765 (+)
G120502 NA non-coding upstream 202011 20970455 ~ 20970984 (+)
G120559 NA non-coding downstream 1397 21175475 ~ 21175735 (+)
G120563 NA non-coding downstream 24647 21198725 ~ 21199086 (+)
G120564 NA non-coding downstream 25344 21199422 ~ 21199763 (+)
G120565 NA non-coding downstream 28794 21202872 ~ 21203228 (+)
G120568 NA non-coding downstream 30661 21204739 ~ 21204954 (+)
G120169 NA other upstream 753867 20407862 ~ 20419128 (+)
G120259 NA other upstream 852739 20319739 ~ 20320256 (+)
LOC110537348 LOC106575899 other upstream 988370 20179254 ~ 20185414 (+)
G121677 NA other downstream 411343 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 647136 21821165 ~ 21825285 (+)
G122030 NA other downstream 842584 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 1168449 22342491 ~ 22346615 (+)

Expression


Co-expression Network