G120580


Basic Information

Item Value
gene id G120580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21223327 ~ 21223586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU139199
ttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttccaaatccggctttaaacttcttcacaacagtatctcagacctgcctggtgtgttcctttttcttcatgatgctctctgcgcttttaacggacctctgagactatcacaatgcaggtgcatttatg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139199 True 260 lncRNA 0.52 1 21223327 21223586

Neighbor

gene id symbol gene type direction distance location
LOC110509776 LOC106576357 coding upstream 86596 21105500 ~ 21136731 (+)
LOC110509817 LOC106576382 coding upstream 119628 21075240 ~ 21103699 (+)
LOC110509768 LOC106576258 coding upstream 164471 20990131 ~ 21058856 (+)
erfl3 LOC106576393 coding upstream 245846 20900204 ~ 20977481 (+)
pou2f2a pou2f2 coding upstream 338251 20741051 ~ 20885076 (+)
LOC110537588 NA coding downstream 171578 21395164 ~ 21411507 (+)
LOC110537581 LOC106605559 coding downstream 254056 21477642 ~ 21491358 (+)
LOC110534436 LOC106605563 coding downstream 288754 21512340 ~ 21530893 (+)
LOC118944067 LOC106597946 coding downstream 307662 21531248 ~ 21533013 (+)
LOC118938333 LOC106605563 coding downstream 309401 21532987 ~ 21547038 (+)
G120579 NA non-coding upstream 710 21222393 ~ 21222617 (+)
G120577 NA non-coding upstream 4802 21218301 ~ 21218525 (+)
G120576 NA non-coding upstream 7262 21215806 ~ 21216065 (+)
G120572 NA non-coding upstream 11994 21211102 ~ 21211333 (+)
G120568 NA non-coding upstream 18373 21204739 ~ 21204954 (+)
G120583 NA non-coding downstream 3398 21226984 ~ 21227226 (+)
G120620 NA non-coding downstream 118923 21342509 ~ 21343579 (+)
G120624 NA non-coding downstream 125724 21349310 ~ 21349510 (+)
G120627 NA non-coding downstream 128569 21352155 ~ 21359493 (+)
G120632 NA non-coding downstream 139033 21362619 ~ 21363021 (+)
G120169 NA other upstream 804199 20407862 ~ 20419128 (+)
G120259 NA other upstream 903071 20319739 ~ 20320256 (+)
LOC110537348 LOC106575899 other upstream 1038702 20179254 ~ 20185414 (+)
G121677 NA other downstream 361835 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 597628 21821165 ~ 21825285 (+)
G122030 NA other downstream 793076 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 1118941 22342491 ~ 22346615 (+)

Expression


Co-expression Network