G121624


Basic Information

Item Value
gene id G121624
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21486971 ~ 21545894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU140455
ccattccacgggtgcatgttctttaattgttcatggttcattgaacaagcacgagaaacagtgtttaacccctttcaatgaagatctgtgaagttatttggattttactaattatctttgaaagacagggttcttgaaaaagggatgtttacacacacacacacacacacacacacacacacacacatacatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaagtattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttaccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcaattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcatgtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgcggaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatagtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgtcccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaactttggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaag

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140455 True 1604 lncRNA 0.42 2 21486971 21545894

Neighbor

gene id symbol gene type direction distance location
LOC110537588 NA coding upstream 75464 21395164 ~ 21411507 (+)
LOC110534415 grik5 coding upstream 175722 21148322 ~ 21311249 (+)
LOC110509776 LOC106576357 coding upstream 350240 21105500 ~ 21136731 (+)
LOC110509817 LOC106576382 coding upstream 383272 21075240 ~ 21103699 (+)
LOC110509768 LOC106576258 coding upstream 428115 20990131 ~ 21058856 (+)
LOC110537595 LOC106605558 coding downstream 10011 21555905 ~ 21570363 (+)
LOC110537622 LOC106605554 coding downstream 125596 21671490 ~ 21676920 (+)
LOC110514317 LOC106578808 coding downstream 152401 21698295 ~ 21704763 (+)
LOC110537629 LOC106578808 coding downstream 159370 21705264 ~ 21708361 (+)
LOC110537775 LOC106605724 coding downstream 190855 21736749 ~ 21742169 (+)
G121618 NA non-coding upstream 22160 21464429 ~ 21464811 (+)
G120646 NA non-coding upstream 106684 21380076 ~ 21380287 (+)
G120641 NA non-coding upstream 110404 21376234 ~ 21376567 (+)
G120632 NA non-coding upstream 123950 21362619 ~ 21363021 (+)
G120627 NA non-coding upstream 127478 21352155 ~ 21359493 (+)
G121676 NA non-coding downstream 40697 21586591 ~ 21594643 (+)
G121726 NA non-coding downstream 120389 21666283 ~ 21667174 (+)
G121727 NA non-coding downstream 121517 21667411 ~ 21667706 (+)
G121732 NA non-coding downstream 126507 21672401 ~ 21672730 (+)
G121861 NA non-coding downstream 136655 21682549 ~ 21682813 (+)
erfl3 LOC106576393 other upstream 510772 20900204 ~ 20977481 (+)
G120169 NA other upstream 1067843 20407862 ~ 20419128 (+)
G120259 NA other upstream 1166715 20319739 ~ 20320256 (+)
LOC110537348 LOC106575899 other upstream 1302346 20179254 ~ 20185414 (+)
G121677 NA other downstream 39527 21585421 ~ 21586101 (+)
LOC110537735 LOC106595974 other downstream 275320 21821165 ~ 21825285 (+)
G122030 NA other downstream 470768 22015130 ~ 22018815 (+)
LOC110537939 apoc1 other downstream 796633 22342491 ~ 22346615 (+)
apoc4 NA other downstream 802689 22348543 ~ 22349936 (+)

Expression


Co-expression Network