XLOC_002101


Basic Information

Item Value
gene id XLOC_002101
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22275913 ~ 22279448 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005886
ATTATGGACTTTCTTGTTATATTAATCcccaaagaagaagaaaaaaaatcagtttggAACAGAATGAGGGTGAGTATATTTAATAGATTGAGTCAAATATACCTCTAATAAACATTATATAAGGCTGTACTGATTGGTGGTACATTTAATTGTGAAGAGTTGAATCAAAGTTCTATTTAAATACACAAAAGATGCATTAAATACCTTTagccatatacatttttaataaagtcgTAGTTTTTAAAGGAATGGTTCACCCAACCAGATAAATGACTAACTTTTTActgaccctcaagtggtttcaaacctttataagtttctttatcCTGTTGAACACTAAGCaggcacacaaacaaacaaccacACAATATAAATCTGATGCTTTAATTTTCATGGATACTGTCTTGCAAAATGATTTCTATACTTATGCATGCATCTTTAGCATCAGAAAATATGCTCTGTACTTTGTGTAAAGAGTGGTGGTGACCCATGAACtagtttataacaaaacagattGTTTTCTTTATCATTTTTAGTTGTGAAATCATTTTAAGAAAATAAGTCATTTAAATATGCAGCGATGGAATTAGATAAAACAGAGAAAATTAGATTgagtaatataaaaattaaataataataattttaaaaaagtacaaaGGGTGGATTTTAAGACTGTTGGGCTAAATCACTAAACCCGCCCCTGCTTAAGATAACTAAACAAAGGCAGGATGTCAATTTTGAGCTGGAGAATCTCTTTAAAGCGAGATGCTTTCTTTAATTGTGCTCCTTTTGCCCTTCACGTGTCGCGCCTGATATCTGATCACCTCTCAGATCCATTAGAGAACAGTTTCTGTCAGAGCCTATTAAAGAAAGAGCAGCCACTGCCAAACACACGCACCAGCAGGACCAGTGCATATAGATTCTAATACCAGATATCCTGATTCGATTGAAAAAATGCAAATAAGTCCCCTGATGCTTAGAGCTAAAGAAGAGAGCGTGGGTGAGAGAAAGCTGCTGCCACGTTTGCGGGAaccgagagaaagagagagagagattttctCAAGGGCTTTTACTGGATGATTCTCAGTCACTTCCTGTTACCTGTGCATGAAGCCTTTGCAGACATGATGAGGTGATCGGGTCTGTCAAGCCTCCGCACTCTCCTGTCTTGTCTGCTCACCACCAGCCAGAGTGTGTGTAAATCATTACATCACTTCACATCCGGTGTCAGACGTGGACACACGCTGAGGACACTGTTCTGTCTGTGTCCTCAGAGCACCCATCGGCTTTTGGTCTGCATGTGTGAGATATGTCAAACTTTTTTTGAACCGGTTATTTTTGGTTGCTGAATATTTGGAAGGCTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005886 True 1365 lncRNA 0.37 2 22275913 22279448

Neighbor

gene id symbol gene type direction distance location
XLOC_002100 NA coding upstream 2051 22253344 ~ 22273862 (+)
XLOC_002099 NA coding upstream 12648 22224203 ~ 22263265 (+)
XLOC_002098 NA coding upstream 136573 22134533 ~ 22139340 (+)
XLOC_002097 npm1a coding upstream 230794 22034477 ~ 22045119 (+)
XLOC_002096 kcnip1b coding upstream 243992 22003750 ~ 22031921 (+)
XLOC_002102 NA coding downstream 93853 22373301 ~ 22377028 (+)
XLOC_002103 nlgn2b coding downstream 102354 22381802 ~ 22478129 (+)
XLOC_002104 gigyf1b coding downstream 230832 22510280 ~ 22533793 (+)
XLOC_002105 efnb3a coding downstream 257245 22536693 ~ 22606468 (+)
XLOC_002106 NA coding downstream 340882 22620330 ~ 22621291 (+)
XLOC_002095 BX005027.1 non-coding upstream 295248 21980547 ~ 21980665 (+)
XLOC_002094 NA non-coding upstream 326505 21936278 ~ 21949408 (+)
XLOC_002110 NA non-coding downstream 554863 22834311 ~ 22838481 (+)
XLOC_002111 AL807389.1 non-coding downstream 567824 22847272 ~ 22847404 (+)
XLOC_002116 FP102052.2 non-coding downstream 658783 22938231 ~ 22956370 (+)

Expression


Co-expression Network