G122026


Basic Information

Item Value
gene id G122026
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 21986931 ~ 21987624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU140954
aggtggaacgagatggattttggctgacattctgcacattttctcattgATTAAACCTTTGATCTCAATAGAGTTTTCTGTTGCCGAAACTATAATCTCTTGTAAACAGTGGACTAAGTTTtctagactttaccctttgctaATGTCTCCAAAAAATTGCATTGTTTAGAACAAGTGAAAAggtgaattgagttattgcacatgcACACTTCAGACTAGGCGTTCcataacggaaatatgcaaatgtttGCTAGAACAAGCCAATAGGATCTTGCTAgcttgtgcttggctctgcccacctccttgcttgttctgccgaCTATGACTCATTTGTTTCCATTTGAaatgacaggctgtggtctatcttggtttagttataaatATCTTTGCTACACCACTGCCACACACCAGtggttactatgacaactagcttggccatgtcagcaaatgactgctgtctgaacacacatctgatttggtcacttgtaacttgctgtttggacggtcagtattctaaaatggatttgagcattgcagtgtgaacaaggctttagtaGTGTGATtaattgatcagttcagtgattgtC

Function

NR:

description
zinc finger CCHC domain-containing protein 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140954 True 587 lncRNA 0.41 2 21986931 21987624

Neighbor

gene id symbol gene type direction distance location
LOC118938391 LOC106605706 coding upstream 20074 21903363 ~ 21966857 (+)
LOC110537720 LOC106578847 coding upstream 133228 21849271 ~ 21853703 (+)
LOC110537677 LOC106578847 coding upstream 138949 21834445 ~ 21847982 (+)
LOC110537735 LOC106595974 coding upstream 161646 21821165 ~ 21825285 (+)
LOC110537743 LOC106605572 coding upstream 174579 21805611 ~ 21812352 (+)
LOC110537828 LOC106605673 coding downstream 36794 22024418 ~ 22029416 (+)
LOC110537667 LOC106577399 coding downstream 42439 22030063 ~ 22069249 (+)
LOC110537757 LOC106605699 coding downstream 90366 22077990 ~ 22115281 (+)
LOC110537821 trp-ii coding downstream 142472 22130096 ~ 22132085 (+)
LOC110537790 trp-ii coding downstream 161319 22148943 ~ 22150744 (+)
G122022 NA non-coding upstream 28190 21958327 ~ 21958741 (+)
G121991 NA non-coding upstream 87316 21899397 ~ 21899615 (+)
G121989 NA non-coding upstream 89862 21896866 ~ 21897069 (+)
G121987 NA non-coding upstream 92049 21894659 ~ 21894882 (+)
G121986 NA non-coding upstream 92426 21894262 ~ 21894505 (+)
G122030 NA non-coding downstream 27506 22015130 ~ 22018815 (+)
arhgef1b arhgef1 non-coding downstream 31651 21967678 ~ 22024337 (+)
G122077 NA non-coding downstream 114391 22102015 ~ 22102282 (+)
G122065 NA non-coding downstream 185088 22172712 ~ 22173051 (+)
G122135 LOC106605692 non-coding downstream 326821 22314445 ~ 22316058 (+)
G121677 NA other upstream 400830 21585421 ~ 21586101 (+)
LOC118938333 LOC106605563 other upstream 439897 21532987 ~ 21547038 (+)
LOC110509768 LOC106576258 other upstream 971040 20990131 ~ 21058856 (+)
erfl3 LOC106576393 other upstream 1010732 20900204 ~ 20977481 (+)
LOC110537939 apoc1 other downstream 354903 22342491 ~ 22346615 (+)
apoc4 NA other downstream 360959 22348543 ~ 22349936 (+)
G122459 LOC106578191 other downstream 823143 22810767 ~ 22811263 (+)
G123980 NA other downstream 1837069 23824693 ~ 23825502 (+)

Expression


Co-expression Network