G122829 (LOC106605673)


Basic Information

Item Value
gene id G122829
gene name LOC106605673
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22026299 ~ 22027717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU141887
TGCAGGAAGGTGCCGTGGGTGTATACAGAGGGCCGCAGGGCGCTGTGGTTGAGGAAACACTGGTACAACCCTGTGTCGTTCAGACGGACCTCCCTCAGGATGAGTGTGTGACACATGACCCCTGCTGCCGTCAGGTTCCCCCCATCCACCGTCACACGGTTGTCTCTCCAGTCCACTCCCCGAAGGATGCCTTTGACCATGTGGGGGCTGGTGGCCCAGGTGGTGTCCACGGCTCCCCCTGTGACTGAGTAGCAGCAGCGCAGGGAGGCGGTGTGAGAGAGCTGCACCCTCTGAGAGGGCCTGTCTGGCTCCAGAGTAACCTGGATACGGCTGAGGTCACCTGCTAGAAGGCAGAGCAGCAGGAGTAGGATGAGGTTGACCCATAACACACTGATCAAAGGTCAGTTATTGACAGCATATCTatataattttgcacgtccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgttattccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaagttgcaaagttcaagggggccgaatactttcgcaaggcactgtataagtgtAGGGTAAGTGTAGGGTATGGTTTCTAGTGtgtgatgattgtggactacaggaagaggaggaccgAGCGCGactccattctcatcgatggggctgtagtagagcaagttgagagcttcaagttccttggtgtccacatcaccaacattgtccaagcacaccaagatagtcgtgatgagggcacgacaaaactgaaaagatttggcatgggtcctcagatcctcaaaaggttctacagctgcaccatcaagagcatcttgactggttgcatcactgcctggtatggcaactgctcagcctccgaccgcaaggcactacagagtagaggtcgaccaattaattggaatggctaattaattagggccgatttcaatcggaaatctgtatttttgggcgccgatttgctgtttttttttttttttttttacacctttacttaatctttatttaacttggcaagtcagttaagagcacattcttattttcaatgacggcgtaCAAACGGTGGGTTATCTGCCTcattcaagggcagaacgacagattttcacctcgtcagctcgggggatccaatcttgcaaccttacagttaactagtccaacgcaataacgacctgcttCTCTCtagttgcactccacaaggagactgcctgttacgcaaatgcagtaagccaaggtaagttgctagctagcattacatttatcttagaaaaaacaataaatcataatcactagttaactacacatggttaatgatattactag

Function

NR:

description
B-cell antigen receptor complex-associated protein alpha chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141887 True 1399 TUCP 0.38 2 22026299 22027717
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110537643 LOC106605567 coding downstream 304664 21713005 ~ 21721635 (-)
cnfn LOC106605555 coding downstream 378813 21645294 ~ 21647486 (-)
LOC110534450 LOC106605556 coding downstream 392654 21631390 ~ 21633645 (-)
LOC118944069 LOC106605559 coding downstream 429764 21595236 ~ 21596535 (-)
LOC110534443 LOC106605563 coding downstream 431829 21586978 ~ 21594470 (-)
LOC110537847 mrpl17 coding upstream 87932 22114700 ~ 22118083 (-)
LOC110537842 NA coding upstream 92862 22120579 ~ 22157534 (-)
LOC110537803 LOC106577461 coding upstream 144975 22172692 ~ 22175353 (-)
LOC110537752 LOC106577440 coding upstream 154128 22180756 ~ 22198840 (-)
LOC110537877 LOC106577478 coding upstream 202083 22229800 ~ 22234924 (-)
G122849 NA non-coding downstream 11012 22014720 ~ 22015287 (-)
G122830 arhgef1 non-coding downstream 11797 22011964 ~ 22014502 (-)
G122844 LOC106593652 non-coding downstream 32795 21989901 ~ 21993504 (-)
G122795 NA non-coding downstream 131838 21894131 ~ 21894461 (-)
G122762 NA non-coding downstream 169206 21856853 ~ 21857093 (-)
G122860 LOC106584637 non-coding upstream 23706 22051423 ~ 22056137 (-)
G122909 NA non-coding upstream 75451 22103168 ~ 22104400 (-)
G122914 NA non-coding upstream 122210 22149927 ~ 22155935 (-)
G122761 LOC106578847 other downstream 170398 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 213867 21796507 ~ 21812432 (-)
G121756 NA other downstream 479262 21490267 ~ 21547037 (-)
G121738 NA other downstream 563269 21462693 ~ 21463030 (-)
G121533 LOC106583873 other downstream 679612 21288616 ~ 21346687 (-)
G122972 NA other upstream 348436 22376153 ~ 22378160 (-)
G123308 NA other upstream 977269 23004986 ~ 23005812 (-)
G123435 NA other upstream 1157923 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 1252462 23279116 ~ 23281851 (-)

Expression

G122829(LOC106605673) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G122829(LOC106605673) Expression in each Bioproject

Bar chart with 21 bars.
G122829(LOC106605673) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network