G122135 (LOC106605692)


Basic Information

Item Value
gene id G122135
gene name LOC106605692
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22314445 ~ 22316058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU141087
CTTGCATATGTTCATAACTGCAATAGCTTTATTTTTCTTAAAAAATTAATGAAATTATAAAAAGTTGACATTATTCAACATTTAACAAGGTAGAAACAAACACATAAATATTTGCGTGTGAATGTTTGGTTATATTTCTCACCCTGcactaaataataataaatatgatGTTCTGGGCATATGCCCAGTTTAATTTCCATGTTTTACAGTGCAGTTCAGGGTATGACAGAATCACTCAAAAAGTTTCAGAGGATCAAGGAGTGGTGTTGGTTTGAGCCATTTAGTTGGTGTTGGTGAAGGCCTGGTAGAGGGCTGTAAGCTGGGCCTTCAGGTCCTGGGCGTAGGGGTCCAGCTTGTCCTTCAGGTCCTCAGCATAGGGGGCTAGGCTCTTCTGCACCATCTGAGCTCTGGTGGTCAGCTGGCTCTGGAGGTTCTCGGCCAGGGGGGCCACACTCTTCTGGAAGTCCTGCAAGCGCAGGTCCACTTTCTGCTTCAGCTCATCTGTGTAGGGACCCAGCTGGGATTGCATCTCCTTCACACTCTGCTCCAGACTCCCCTTCAGCTCCTCACTCTTCTGAAGCAGGGTGGCCCTCAGGGCCTCAGAGTCCAGGGACTCTGCATAGGGGGCCAGATCCTGTTTCAGCTGCTCAACTCTCTGCTGGACTTGTGTCTTGATCTCTTCTGCGTAGGGCTCCAGTTTCCCCTTGACGCTGCCCAGGTCCTGCTCCAGACGCTCTCTCAGCACCTCAGCCTCCTGGGTAATCTTGGTCATCAGGTCCTTGGCTGCAGGAGGAAGCTGCTCCTGCAGGGAGACTGCGTATTGGCTGGCCACGTCAGCACTCTCTGTGATACGGTCaTTGACATCCTGTCCCAGCTGAGACTTCCTGATCATCTGGACGGTGTCGTCGGCAGTTTTTGTTGCCTTGGCGACATAGTCCCAGAAGGCATCTGTCAGCTGCTCCAACTGTGGCTTGGGCTCATCAGCATAGAACAGGTTAGCATGGCAACCAGAGAGTATAGCAATTGCAAGCACCACAGACACCTTCATATTTGCGTTTCTCACGGTTTTTTTCCTGgtgtatctctgtgtattcagtctgtctgtgtgtctatcaGGCCAGTGCCATGCTGTATATATAGTCGAAACCAGAG

Function

NR:

description
apolipoprotein A-IV-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141087 True 1152 lncRNA 0.42 4 22314445 22316058

Neighbor

gene id symbol gene type direction distance location
LOC118938435 NA coding upstream 12209 22253652 ~ 22302236 (+)
bcl3 LOC106605697 coding upstream 84721 22203952 ~ 22229724 (+)
LOC110537812 tryp coding upstream 132361 22154760 ~ 22182084 (+)
LOC110537837 NA coding upstream 142460 22170979 ~ 22171985 (+)
LOC110537790 trp-ii coding upstream 163701 22148943 ~ 22150744 (+)
LOC110537912 LOC106605691 coding downstream 3044 22319102 ~ 22320715 (+)
LOC110537922 LOC106605689 coding downstream 16234 22332292 ~ 22336707 (+)
LOC110537939 apoc1 coding downstream 26433 22342491 ~ 22346615 (+)
apoc4 NA coding downstream 32485 22348543 ~ 22349936 (+)
LOC110537948 apoa2 coding downstream 36911 22352969 ~ 22356067 (+)
G122065 NA non-coding upstream 141394 22172712 ~ 22173051 (+)
G122077 NA non-coding upstream 212163 22102015 ~ 22102282 (+)
arhgef1b arhgef1 non-coding upstream 290112 21967678 ~ 22024337 (+)
G122030 NA non-coding upstream 295630 22015130 ~ 22018815 (+)
G122026 NA non-coding upstream 326821 21986931 ~ 21987624 (+)
G122225 NA non-coding downstream 57934 22373992 ~ 22374650 (+)
G122242 LOC106577531 non-coding downstream 95803 22411861 ~ 22412408 (+)
G122256 NA non-coding downstream 113752 22429810 ~ 22431364 (+)
G122325 LOC106577561 non-coding downstream 258059 22574117 ~ 22578051 (+)
G122330 NA non-coding downstream 264446 22580504 ~ 22583666 (+)
LOC110537735 LOC106595974 other upstream 489351 21821165 ~ 21825285 (+)
G121677 NA other upstream 728344 21585421 ~ 21586101 (+)
LOC118938333 LOC106605563 other upstream 767411 21532987 ~ 21547038 (+)
LOC110509768 LOC106576258 other upstream 1298554 20990131 ~ 21058856 (+)
G122459 LOC106578191 other downstream 494709 22810767 ~ 22811263 (+)
G123980 NA other downstream 1508635 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 1545859 23861576 ~ 23881639 (+)

Expression


Co-expression Network