G122967 (apoa2)


Basic Information

Item Value
gene id G122967
gene name apoa2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22354585 ~ 22356072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU142057
GAGAGTTTCAACTTTCAGATCTTTAttgaacacaaacacaaacacacacacacacactcctgttagAGTATCAAACACGTAGTTATATACATGCAAAATGTTGAACGAATGTTAAAGCTCTTGCGAGATGTCAATCTTCCTATCTAGCATGCTTTGACCTTTGTTTCCCTTGAACAGTCATGTCTAGGAAAGTGTTGACATAGAAACCGGGAGGTGATGTGTTTTGCATTGTGCATTTCTCTTCTCAATCACCTCGAGGTATTTCCCCCCTCTAGCATTTAATACATGTATCAGAAGCACAGCTAAAGCGGAGCCAAGCCCTGTGTGGAAAGGTACAAGCGTGTGGGGCGGTCCGATGCGACGGAGTCTATCTAGGGCTCATTCCTCGGCGGGTAGGATTTTGTCGAGGTAAACCTTGATGGAGGTGATGGCCTCGTCCAGGTAGGTGCCGACATGGGGGCGCACATAGTGTCCGTACAGACCCAGGCCGGCCATACGGGCCTTGTCCACCAAGGGTGCTGCTTCCTGGGCCAGACCaATCCGATCTTGACAGCGCTCAGGAATTTGGGGTTGCCCTGCAGCTCCTCGATGTAGTCTTTGGCAGCCTGGCCCTGGCCCTGGCCCAGGTTCTCAGTCATAGGCCCCACAGCAGCCTGCACCTTGCTGTAGGCGTTCATCAGCCTCTTGTAGAACACAGACTTCATGGCCTCATACTTCTCCACCAGCTCCTTGTCTGGCTCTGGTACTTGACACAGGCACACAGAGActggaggggagacagggaagagaTAGTATTTATTCATGAATT

Function

symbol description
apoa2 Acts upstream of or within chordate embryonic development; epiboly involved in gastrulation with mouth forming second; and nuclear division. Is expressed in liver and yolk syncytial layer.

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142057 True 808 lncRNA 0.38 2 22354585 22356072

Neighbor

gene id symbol gene type direction distance location
LOC110537898 LOC106605692 coding downstream 38517 22314451 ~ 22316068 (-)
LOC110537882 LOC106577487 coding downstream 101099 22236828 ~ 22253486 (-)
LOC110537877 LOC106577478 coding downstream 119661 22229800 ~ 22234924 (-)
LOC110537752 LOC106577440 coding downstream 155745 22180756 ~ 22198840 (-)
LOC110537803 LOC106577461 coding downstream 179232 22172692 ~ 22175353 (-)
bcam LOC106577531 coding upstream 43585 22399657 ~ 22499146 (-)
rps19 LOC100689943 coding upstream 169112 22525184 ~ 22531056 (-)
cadm4 LOC106577561 coding upstream 194856 22550928 ~ 22749138 (-)
LOC110534479 LOC106578237 coding upstream 399280 22755352 ~ 22774315 (-)
si:ch211-79k12.2 LOC106605590 coding upstream 418436 22774508 ~ 22779710 (-)
G122973 NA non-coding downstream 7957 22342611 ~ 22346628 (-)
G122891 NA non-coding downstream 174186 22179991 ~ 22180399 (-)
G122915 NA non-coding downstream 198314 22150272 ~ 22156271 (-)
G122914 NA non-coding downstream 198650 22149927 ~ 22155935 (-)
G123044 NA non-coding upstream 28074 22384146 ~ 22384796 (-)
G123088 NA non-coding upstream 117382 22473454 ~ 22474204 (-)
G123090 NA non-coding upstream 125798 22481870 ~ 22575322 (-)
G123149 NA non-coding upstream 254678 22610750 ~ 22624269 (-)
LOC110537842 NA other downstream 197051 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 326868 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 498684 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 542153 21796507 ~ 21812432 (-)
G121756 NA other downstream 807548 21490267 ~ 21547037 (-)
G122972 NA other upstream 20081 22376153 ~ 22378160 (-)
G123308 NA other upstream 648914 23004986 ~ 23005812 (-)
G123435 NA other upstream 829568 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 924107 23279116 ~ 23281851 (-)
G124840 NA other upstream 1547767 23903839 ~ 23904677 (-)

Expression


Co-expression Network