Gene
RNA
| Item | Value |
|---|---|
| gene id | G122242 |
| gene name | LOC106577531 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 22411861 ~ 22412408 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| basal cell adhesion molecule-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU141198 | True | 362 | lncRNA | 0.53 | 2 | 22411861 | 22412408 |
22,410,000
22,410,400
22,410,800
22,411,200
22,411,600
22,412,000
22,412,400
22,412,400
22,412,800
22,413,200
22,413,600
22,414,000
22,414,400
22,414,800
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944072 | NA | coding | upstream | 19682 | 22390731 ~ 22392179 (+) |
| LOC110537956 | LOC106605684 | coding | upstream | 27104 | 22381333 ~ 22384757 (+) |
| apoc2 | LOC100135886 | coding | upstream | 33711 | 22376139 ~ 22378150 (+) |
| LOC110537948 | apoa2 | coding | upstream | 55794 | 22352969 ~ 22356067 (+) |
| apoc4 | NA | coding | upstream | 61925 | 22348543 ~ 22349936 (+) |
| LOC110537974 | LOC106605680 | coding | downstream | 83713 | 22496121 ~ 22544404 (+) |
| LOC110538298 | LOC106605596 | coding | downstream | 442331 | 22854739 ~ 22856678 (+) |
| LOC110538314 | trp-iii | coding | downstream | 444162 | 22856570 ~ 22858072 (+) |
| LOC110538188 | LOC106578351 | coding | downstream | 581343 | 22993751 ~ 22997374 (+) |
| LOC110538306 | LOC106605606 | coding | downstream | 643373 | 23055781 ~ 23069547 (+) |
| G122225 | NA | non-coding | upstream | 37211 | 22373992 ~ 22374650 (+) |
| G122135 | LOC106605692 | non-coding | upstream | 95803 | 22314445 ~ 22316058 (+) |
| G122065 | NA | non-coding | upstream | 238810 | 22172712 ~ 22173051 (+) |
| G122077 | NA | non-coding | upstream | 309579 | 22102015 ~ 22102282 (+) |
| arhgef1b | arhgef1 | non-coding | upstream | 387528 | 21967678 ~ 22024337 (+) |
| G122256 | NA | non-coding | downstream | 17402 | 22429810 ~ 22431364 (+) |
| G122325 | LOC106577561 | non-coding | downstream | 161709 | 22574117 ~ 22578051 (+) |
| G122330 | NA | non-coding | downstream | 168096 | 22580504 ~ 22583666 (+) |
| G122340 | NA | non-coding | downstream | 204024 | 22616432 ~ 22620371 (+) |
| G122350 | NA | non-coding | downstream | 218920 | 22631328 ~ 22631883 (+) |
| LOC110537939 | apoc1 | other | upstream | 65246 | 22342491 ~ 22346615 (+) |
| G122030 | NA | other | upstream | 393046 | 22015130 ~ 22018815 (+) |
| LOC110537735 | LOC106595974 | other | upstream | 586767 | 21821165 ~ 21825285 (+) |
| G121677 | NA | other | upstream | 825760 | 21585421 ~ 21586101 (+) |
| G122459 | LOC106578191 | other | downstream | 398359 | 22810767 ~ 22811263 (+) |
| G123980 | NA | other | downstream | 1412285 | 23824693 ~ 23825502 (+) |
| LOC110538497 | LOC106605627 | other | downstream | 1449509 | 23861576 ~ 23881639 (+) |
| G124121 | LOC106605585 | other | downstream | 1734453 | 24146861 ~ 24148593 (+) |
| LOC110538915 | LOC106605649 | other | downstream | 2128596 | 24540963 ~ 24544247 (+) |
