G123277 (LOC106605579)


Basic Information

Item Value
gene id G123277
gene name LOC106605579
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22860225 ~ 22863254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU142408
GGATGTTCGCTCAAGAGCCTGTGCATGCTGTCCTCCCACAAGTGCTCACACTCCCGCCGCCGCAGGACTGTGGCTGAACGACAGCAATGCCATGACTGCAGCCAGAGCTTCTGCAACTTGACGGCACTCAGAAGCCACCGGGAGAGACagcatggagaggagaggaactgggaggatgaggaggacagggtggtgagagaggaagaggagggaagcaCTGCAGTAATCTCTAATGATTCAACCTGAGTTTCAGTAGCCCAGCCTCCCCAGTCTCCTCAGTGCCACCAGTGTTTCATGACCTTTCAGGATGCAGAGACAGAAGAGGCATTTACGCTTCAAGCACCCAGTAGAGTATGAGAGACGTCTCAGAGGTCGCACAGTGTTTGCCTGCTGTGTCTGCGACTGAACATTCCCCTCCTCCCGCCTGCTCTCAGCTCACCAACGCACCCACAGCAAGGGAGTCTGCCCCCTACTGGACCAGAAGACTCTGTCCAAGAAAGCACAGATGGAGGAGAGGCTGAGGGTATAGACAATGAAAAAAACAGAGCTGGTCCAATGAGCTGTGAGCACTGTCATATCATCTTCAATGACCCTCGAACCTGGGAACGTCACATGACGGCCAAGCACCCCCCCATCCCTGTCGACACCTACTTCACCAGGGAATGCCTACCTGACTTCTAGACCTGCCAGGGGTCAACTGCGACCCTATCGCTGCTCATCCTGTGGAGAGAGATTCATACAGGAAAGCACTCTGACCAAACACGGCACCAAGGCACACGTCAGCTGAGAGAGGATGATTCTGGGAGCATAGATACCAAGATGAAGAGGACAATAGGGCTGTGATGATACCAGTGTCacaatattttttccatggcaaaaatgaaaacatgaaGCAGAACAGACTCTTTGGTCCttttattttccaagctaaaggtttaaatataaatacatgtgattctGGATAaaaaacataatgatgtttgtttccaacttCAAGGCTGTTTccccaaagaagttaaatccactttgtgttttgtttccttgccacgatactggTATCTTCCTGGCCCTAACATCTTGAAAAGCACCCGTGTCAAAATGGAGtagttttcaaaataaaagcctgaccATATTTATTATAGAttcacataaaaaaataaaaaattatcctGTAccctgatttaagatgaaaacaGACCAAACCAGCTTTTGATCATTTTGATAGCAATAATGTCTGTACTATGACATGTAAactacatgaacaaaagtatgtgaacacctgctcatcgaacatctcatccAAAATCATGGatattaatatggaattggtcccccctttactgctataacagcctccactcttttgggaaggctttccattagatgttggaacattgctgtgggtacttgatccattcagccacgagcattagtgaggtcgggcactgatgttgggagattagacctggctcgcagtcttgagttccaattcatcctaaaagtgttcgatggggttgaggtcaaggctctatgcaggcctgtcaagttcttacacaccgatctcaacaaaccatttctgtatggacctcgctttgtggacGGTGGCATTGtaatactgaaacaggaaagggccttccccgaattgttgccacaaagttggaagcactcAATCgtcaagaatgtcattgtatgctgtagaggtaagatttcccttcacttgaactaaTGGGCCTAGCACAAACCATGAAtaactattattcctcctccaccaaactttacaattggcactatgcattggggcaggtagcgttctcctggcatccgccaaacccagattcatccatcggactgccagatggggaagcgtgattcatcactccagagaatgtttttccactgctccaaatccaatggtggcgagctttacacctctcaagctgacgcttggcattgtacatagtgatcttaggcttgtgtacggctgctctgccatggaaacccatgcCATGAAGCTCTCAATGAaccgttcttgtgctgatgttgcttccagaggcaatttggaactcggtagtgagtgttgcaactagTTCTGTTACAGTGACTATATTACTGGCACACGTGTCATGagggcagtcaaattccacgtgaccatttagtcacgataattaggcttctccaagctctgatgctgctgatggtcattagtaggctggccactcgatttcgtctctgcgttatattggaCT

Function

NR:

description
PREDICTED: zinc finger protein 771-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142408 True 2246 lncRNA 0.33 4 22860225 22863254
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534486 NA coding downstream 6379 22853130 ~ 22853846 (-)
LOC118936533 LOC106605595 coding downstream 9375 22847803 ~ 22850850 (-)
LOC118938551 LOC106605594 coding downstream 14744 22839988 ~ 22845481 (-)
LOC110538050 LOC106605593 coding downstream 21717 22822697 ~ 22838508 (-)
LOC110538006 LOC106605591 coding downstream 47090 22803447 ~ 22813135 (-)
LOC110538076 LOC106578103 coding upstream 1688 22864942 ~ 22882936 (-)
im:7147486 LOC106605599 coding upstream 20724 22883978 ~ 22899520 (-)
LOC110538037 LOC106605599 coding upstream 43832 22907086 ~ 22949770 (-)
si:dkeyp-84f3.5 LOC106605600 coding upstream 90327 22953581 ~ 22965449 (-)
LOC110538268 LOC106605601 coding upstream 104797 22968051 ~ 22971540 (-)
G123242 NA non-coding downstream 5094 22854889 ~ 22855131 (-)
G123240 NA non-coding downstream 13762 22845750 ~ 22846463 (-)
G123234 NA non-coding downstream 20689 22838771 ~ 22839536 (-)
G123241 NA non-coding downstream 38409 22820600 ~ 22821816 (-)
G123281 NA non-coding upstream 12981 22876235 ~ 22877073 (-)
G123283 NA non-coding upstream 26478 22889732 ~ 22889979 (-)
G123296 NA non-coding upstream 55074 22918328 ~ 22918547 (-)
G123299 NA non-coding upstream 59940 22923194 ~ 22923601 (-)
G123300 NA non-coding upstream 60572 22923826 ~ 22924025 (-)
G122972 NA other downstream 482065 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 702691 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 832508 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 1004324 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 1047793 21796507 ~ 21812432 (-)
G123308 NA other upstream 141732 23004986 ~ 23005812 (-)
G123435 NA other upstream 322386 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 416925 23279116 ~ 23281851 (-)
G124840 NA other upstream 1040585 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 1295913 24144519 ~ 24172836 (-)

Expression

G123277(LOC106605579) Expression in all Baseline Samples

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G123277(LOC106605579) Expression in each Bioproject

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G123277(LOC106605579) Expression in each Sample
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Co-expression Network