G122573 (LOC100194703)


Basic Information

Item Value
gene id G122573
gene name LOC100194703
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23001935 ~ 23005627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU141589
TTTAAATAATTGATACTGTGGCGTATCAATATCCCTGTGGTCTgccatttttttaacctttaaatGCGAGTCACATTGAGATTAAAAATCTCTTTTACAAGAGAGCTGTAACGGTTGTCgtgggtggaagaaggagaggaccaaaacgcagcgtggttagtgttcatcttatttaataataatcaaaactgaacactgaataacaaaaacaacaaagaaacaaccgaaacagttctgtctggtgcagacacacaaagactgaaaataactacccacaaaacacaatcgaacacaggctacctaaatatggttctcaatcagggacaacgattgacagctgcctctgattgagaaccatatcaggccaaacacagaaatagaaaatcatagaaaaacaaacagactgcccaccccaactcacgccctgaccatactaaaacaaataataaaataacagaactatggtcagaacgggACAAGAGCCCTGTATACATTACAATAAAAACAGaataaaacatacacatacatgtATAGAACAATATAATTCAGCacacaacaaaataaaaataatgaataCAAGCAAGGACgtaaattaagaacaaattgtatAATATTACATTGTATTGTACCCTCCAACAATTTCCCACAGATCCCTTGTCCAAAATGTGCTTAATCTGTCAATTACTTAGTAAATTGTTATTTATCTTAATTTATTTTGGGAAACCCTGTTCTATGGAACAAACTAGGTACTTTGGTTAAGATATGGCAACCTTTTATTGAATATATGGAAAACTTCCCTGGTGATGGATCATGAACCCCTCGTCACCCCAACACTCTAAACATTCTGGTGCAAGGTGTGGGGGCACTAAAATGGCTAATTATATGCATAAATGATGACTTCGGACAGCTTCCCAGTCTTCAGAATCAGAACTGTATCAATCTAACCATAGAGGGAAGAGTGCTCCTTGGTGAGAGCCAGTGCCGGTCAACAATGCCAGGATAACAAGGATGGTGATTAAAATGAATCAAAACATTATTGTGGTGAGTATATGAGGGTCTGAATGGTACCAGTCTATGTTGTCATCATTACTCATCACCCTCACTAGATTTGGGTTGATATCATGTTATATTCTGACTTCACTAACTTCTCGGCCTAGGAGGGGGCCTATGTGATATACAgttggccaaaagttgagaatgacacaaatattaatttccacaaagtttgctgcttcagtgtctttagatatttctgtcagatgttactatggaatactgaagtataattacaagcatttcataagtgtcaaaggcttatattaacaattacatgaagttgaggtaaagagtcaatatttgtagtgttgacccttctttttcaagacctctgcaatctgccctggcatacTGTCAAtcaacttctgggccacatcctgactgatggcagcccattcttgcataatcaatgcttggagtttgtcagaatttgtgggtttttgtttgtccctctcaagcctcttgaggattgaccacaagttctcaatgggattaaggtctggggagtttcctggccatggacccaaaatatcaatgttttgttccccgagcctcATGGCaaagtgctccatcatgctggaaaaggcattgttcgtcaccaaactgttcccggatggttgggagaagttgctctcggaggatgtgttggtaccattctttattcatggctgtgttcttagggaaaATTGttagtgagcccactcccttggctgaggagcaaccccacacatgaatggtctcaggatgctttactgttggcatgacacaggactgatggtagcgctcaccttgtcttctccagacaagcttttttccagatgcctcaaacaatcggaaaggggattcatcagagaaaatgactttgccCCAGTTCTCAGCAGTGCAATCCCTGTACcgtttgcagaatatcagtctgtccctgatgttttcctggagagaagtggcttctttgctgctctTCTTGAcatcaggccatcctccaaaagtcttggcctcactgtgcgtgcagatgcactcacacctgcctgctgccattcctgagcaatctCTTTACTGGTGttgccctgatcccgcagctgaatcaactttaggagacggtcctggcgcttgctggactttcttgggcgccctgaagcattgttcacaacaattgaaccactctccttgaagttcttgatgatccgataaatggttgatttaggtgcaatcttactggcagcaatatacttgcatgtgaagccctttttgtgcaaagcaatgatgatggcacgtgtttccttgcaggcaaCCACGatagacagaggaagaacaatgattccaagcaccaccctccttttgaagcttctagtctgttattcaaactcaatcagcatgacagagtgatctccagtcttgtcctcgtcaacacagaatcactgacatgatgtcagctggtccttttgtggcagggctgaaatgcagtggaaatgttttctgGGGATTCAgataatttgcatggcaaagagggactttgcaattcatctgatcactcttcataacttTCTGGAGTATAtacaaacttttggccacgactgtatatacacacactatctGATAGggtgacatacagtggggcaaaaaagtatttagtcagccaccaattgggcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacgtaggtttttttatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaagagctttcaaagaacaccagaaacaaaattgtagatctgcaccaggctgggaagactgaatctgcaacaggtaagcagcttggtttgtagaaatcaactgtgggaggaattattaggaaatggaagacatacaataccactgataatctccctctatctggggctccacgcaatatctcaccccgtggggtcaaaatgttcacaagaactgtgaccaaaaatcccagaaccacacggggggacctagtgaatgacctgtagagagctgggaccaaagtaacaaagcctaccattagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggccagtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcatcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatgcctactgtgaagcatgggggtggaaacatcatgctttggggctgcttttctgcaaagggaccaggatgactgatccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaag
>TU141588
aatcagggacaacgattgacagctgcctctgattgagaaccatatcaggccaaacacagaaatagaaaatcatagaaaaacaaacagactgcccaccccaactcacgccctgaccatactaaaacaaataataaaataacagaactatggtcagaacgggACAAGAGCCCTGTATACATTACAATAAAAACAGaataaaacatacacatacatgtATAGAACAATATAATTCAGCacacaacaaaataaaaataatgaataCAAGCAAGGACgtaaattaagaacaaattgtatAATATTACATTGTATTGTACCCTCCAACAATTTCCCACAGATCCCTTGTCCAAAATGTGCTTAATCTGTCAATTACTTAGTAAATTGTTATTTATCTTAATTTATTTTGGGAAACCCTGTTCTATGGAACAAACTAGGTACTTTGGTTAAGATATGGCAACCTTTTATTGAATATATGGAAAACTTCCCTGGTGATGGATCATGAACCCCTCGTCACCCCAACACTCTAAACATTCTGGTGCAAGGTGTGGGGGCACTAAAATGGCTAATTATATGCATAAATGATGACTTCGGACAGCTTCCCAGTCTTCAGAATCAGAACTGTATCAATCTAACCATAGAGGGAAGAGTGCTCCTTGGTGAGAGCCAGTGCCGGTCAACAATGCCAGGATAACAAGGATGGTGATTAAAATGAATCAAAACATTATTGTGGTGAGTATATGAGGGTCTGAATGGTACCAGTCTATGTTGTCATCATTACTCATCACCCTCACTAGATTTGGGTTGATATCATGTTATATTCTGACTTCACTAACTTCTCGGCCTAGGAGGGGGCCTATGTGATATACAgttggccaaaagttgagaatgacacaaatattaatttccacaaagtttgctgcttcagtgtctttagatatttctgtcagatgttactatggaatactgaagtataattacaagcatttcataagtgtcaaaggcttatattaacaattacatgaagttgaggtaaagagtcaatatttgtagtgttgacccttctttttcaagacctctgcaatctgccctggcatacTGTCAAtcaacttctgggccacatcctgactgatggcagcccattcttgcataatcaatgcttggagtttgtcagaatttgtgggtttttgtttgtccctctcaagcctcttgaggattgaccacaagttctcaatgggattaaggtctggggagtttcctggccatggacccaaaatatcaatgttttgttccccgagcctcATGGCaaagtgctccatcatgctggaaaaggcattgttcgtcaccaaactgttcccggatggttgggagaagttgctctcggaggatgtgttggtaccattctttattcatggctgtgttcttagggaaaATTGttagtgagcccactcccttggctgaggagcaaccccacacatgaatggtctcaggatgctttactgttggcatgacacaggactgatggtagcgctcaccttgtcttctccagacaagcttttttccagatgcctcaaacaatcggaaaggggattcatcagagaaaatgactttgccCCAGTTCTCAGCAGTGCAATCCCTGTACcgtttgcagaatatcagtctgtccctgatgttttcctggagagaagtggcttctttgctgctctTCTTGAcatcaggccatcctccaaaagtcttggcctcactgtgcgtgcagatgcactcacacctgcctgctgccattcctgagcaatctCTTTACTGGTGttgccctgatcccgcagctgaatcaactttaggagacggtcctggcgcttgctggactttcttgggcgccctgaagcattgttcacaacaattgaaccactctccttgaagttcttgatgatccgataaatggttgatttaggtgcaatcttactggcagcaatatacttgcatgtgaagccctttttgtgcaaagcaatgatgatggcacgtgtttccttgcaggcaaCCACGatagacagaggaagaacaatgattccaagcaccaccctccttttgaagcttctagtctgttattcaaactcaatcagcatgacagagtgatctccagtcttgtcctcgtcaacacagaatcactgacatgatgtcagctggtccttttgtggcagggctgaaatgcagtggaaatgttttctgGGGATTCAgataatttgcatggcaaagagggactttgcaattcatctgatcactcttcataacttTCTGGAGTATAtacaaacttttggccacgactgtatatacacacactatctGATAGggtgacatacagtggggcaaaaaagtatttagtcagccaccaattgggcaagttctcccacttaaaaagatga

Function

NR:

description
transposase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141589 False 3693 lncRNA 0.44 1 23001935 23005627
TU141588 True 2411 lncRNA 0.43 1 23002250 23004660

Neighbor

gene id symbol gene type direction distance location
LOC110538188 LOC106578351 coding upstream 4561 22993751 ~ 22997374 (+)
LOC110538314 trp-iii coding upstream 143863 22856570 ~ 22858072 (+)
LOC110538298 LOC106605596 coding upstream 145257 22854739 ~ 22856678 (+)
LOC110537974 LOC106605680 coding upstream 457531 22496121 ~ 22544404 (+)
LOC118944072 NA coding upstream 609756 22390731 ~ 22392179 (+)
LOC110538306 LOC106605606 coding downstream 50154 23055781 ~ 23069547 (+)
kcnn4 LOC106578046 coding downstream 71719 23077346 ~ 23119231 (+)
LOC110538208 smg9 coding downstream 122609 23128236 ~ 23135855 (+)
LOC110538332 LOC106605607 coding downstream 142878 23148505 ~ 23151891 (+)
si:dkey-238d18.4 LOC106605609 coding downstream 230593 23236220 ~ 23245933 (+)
G122572 NA non-coding upstream 246 23001192 ~ 23001689 (+)
G122571 NA non-coding upstream 2798 22998771 ~ 22999137 (+)
G122560 NA non-coding upstream 19366 22982345 ~ 22982569 (+)
G122515 NA non-coding upstream 71272 22930343 ~ 22930663 (+)
G122509 NA non-coding upstream 77509 22924134 ~ 22924426 (+)
G122575 NA non-coding downstream 4795 23010422 ~ 23012373 (+)
G122593 NA non-coding downstream 45156 23050783 ~ 23051094 (+)
G122617 NA non-coding downstream 91803 23097430 ~ 23097959 (+)
G122630 NA non-coding downstream 111138 23116765 ~ 23117208 (+)
G122459 LOC106578191 other upstream 190672 22810767 ~ 22811263 (+)
apoc4 NA other upstream 651999 22348543 ~ 22349936 (+)
LOC110537939 apoc1 other upstream 655320 22342491 ~ 22346615 (+)
G122030 NA other upstream 983120 22015130 ~ 22018815 (+)
LOC110537735 LOC106595974 other upstream 1176841 21821165 ~ 21825285 (+)
G123980 NA other downstream 819066 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 856290 23861576 ~ 23881639 (+)
G124121 LOC106605585 other downstream 1141234 24146861 ~ 24148593 (+)
LOC110538915 LOC106605649 other downstream 1535377 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 1867424 24873051 ~ 24873834 (+)

Expression


Co-expression Network