G124124 (LOC106605585)


Basic Information

Item Value
gene id G124124
gene name LOC106605585
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24149093 ~ 24154800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU143375
GCAGTTTATTTGTCGATACACAATTAACCAGTGATCACCTTGTAATAGTGTGCATCAACCACACAGCCACAGTTCTCCAGTAGGACACACTTGCCACCATCAAACACAAAGCCGTCGTCACACTGGCAGCCCTCCTGGCATAGTGGGCATTTTGGAGACTCGCTGAGAGAGTAACAGGTAGAAGAACAGGTGTCGGCACACAACTCATAGTGACTGTTAGCTGGACACGTCAGAGCTAGAAGACAGATGGAAATGGGAGGAGATGCATGTTATCAAAAAAATTAAATCAGCTTCAGCTTCAAATGTTTTTCAGCAGAGCATTAGGTCAGAAAAATATTGCACACTAAGATAAACCAGGATAAGGTAAATTAACTTCAAATATCAAAATTCACTCACAACAAAACTGGTCAGATCTCCAGCTGCTGACAAGGCCACCGGATACCTGACAGAAAGTCACATATGTCTGTAAGTGGCGGCACAGGGcatccccaccctctccctccttcatgCACTCCTCAAAGTGCTCTTGTGGTGGCACAACAGCATGGCATTGGGCAAATGGACCCTTGGTTGACTTCATGATGCTACAAGCCGGTGGGGGTCCACTGGTGGGAGGACACTTCAAGCCACCGTCACATCCTGTCTGACATTTGACCCCTTCCTGAACCACCAACCACCCCGCTGCAAACTTCTCCACAGACGGCTCCTGCAGCCCACTGGGCAGCAGGAAGTCATCCTCCTTCTTGTCATTATAGTTGCCACAGAGACCACCGGTAACACCTTTGTAAGTGGATGGTAGCTGTATGATGGCGCCAGCAACGGTGTCGTAGGTCACCATCAAGCCAAAGTCTGTTACCACGACGATGTTAATGCCGTTCTGGTAGGCCCTGACCTTTCCATCTCCGAGTGACAGTGGGAGATTTGCTGTAACGTCATCCACCTGTGAAAGGAGAAAAGATTGAAAACATCAGTTTTTCTAAT
>TU143376
GCAGTTTATTTGTCGATACACAATTAACCAGTGATCACCTTGTAATAGTGTGCATCAACCACACAGCCACAGTTCTCCAGTAGGACACACTTGCCACCATCAAACACAAAGCCGTCGTCACACTGGCAGCCCTCCTGGCATAGTGGGCATTTTGGAGACTCGCTGAGAGAGTAACAGGTAGAAGAACAGGTGTCGGCACACAACTCATAGTGACTGTTAGCTGGACACGTCAGAGCTAGAAGACAGATGGAAATGGGAGGAGATGCATGTTATCAAAAAAATTAAATCAGCTTCAGCTTCAAATGTTTTTCAGCAGAGCATTAGGTCAGAAAAATATTGCACACTAAGATAAACCAGGATAAGGTAAGTTAACTTCAAATATCAAAATTCACTCACGACAAAACTGGTCAGATCTCCAGCTGCTGACAAGGCCACCGGATACCTGACAGAAAGTCACATATGTCTGTAAGTGGCGGCACAGGGcatccccaccctctccctccttcatgCACTCCTCAAAGTGCTCTTGTGGTGGCACAACAGCATGGCATTGGGCAAATGGACCCTTGGTTGACTTCATGATGCTACAAGCCGGTGGGGGTCCACTGGTGGGAGGACACTTCAAGCCACCGTCACATCCTGTCTGACATTTGACCCCTTCCTGAACCACCAACCACCCCGCTGCAAACTTCTCCACAGACGGCTCCTGCAGCCCACTGGGCAGCAGGAAGTCATCCTCCTTCTTGTCATTATAGTTGCCACAGAGACCACCGGTAACACCTTTGTAAGTGGATGGTAGCTGTATGATGGCGCCAGCAACGGTGTCGTAGGTCACCATCAAGCCAAAGTCTGTTACCACGACGATGTTAATGCCGTTCTGGTAGGCCCTGACCTTTCCATCTCCGAGTGACAGTGGGAGATTTGCTGTAACGTCATCCACCTGTGAAAGGAGAAAAGATTGAAAACATCAGTTTTTCTAAT

Function

NR:

description
IgGFc-binding protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143375 False 981 lncRNA 0.37 2 24149093 24154800
TU143376 True 981 lncRNA 0.45 2 24149093 24154800

Neighbor

gene id symbol gene type direction distance location
LOC110538661 LOC106605634 coding upstream 24279 24106644 ~ 24124814 (+)
tmem147 LOC106605633 coding upstream 68078 24077675 ~ 24081015 (+)
LOC100135863 LOC106577739 coding upstream 72868 24069369 ~ 24076225 (+)
LOC100136301 LOC106605632 coding upstream 94429 24041681 ~ 24054664 (+)
LOC110538629 LOC106605631 coding upstream 133149 24001565 ~ 24015944 (+)
LOC110538727 LOC106605639 coding downstream 36090 24190890 ~ 24200234 (+)
LOC110538747 LOC106578439 coding downstream 46299 24201099 ~ 24238678 (+)
LOC110538776 LOC106605668 coding downstream 105588 24260388 ~ 24270406 (+)
LOC110538793 LOC106605640 coding downstream 141367 24296167 ~ 24320738 (+)
LOC110538837 fbrl coding downstream 183925 24338725 ~ 24342581 (+)
G124122 LOC106578386 non-coding upstream 2371 24146066 ~ 24146722 (+)
G124119 NA non-coding upstream 19137 24129598 ~ 24129956 (+)
G124115 NA non-coding upstream 31637 24117232 ~ 24117456 (+)
G124113 NA non-coding upstream 33435 24115447 ~ 24115658 (+)
G124087 NA non-coding upstream 92973 24055823 ~ 24056120 (+)
G124130 NA non-coding downstream 7765 24162565 ~ 24162813 (+)
G124132 NA non-coding downstream 8895 24163695 ~ 24163901 (+)
G124139 NA non-coding downstream 17370 24172170 ~ 24172474 (+)
G124117 NA non-coding downstream 22046 24176846 ~ 24177151 (+)
G124118 NA non-coding downstream 22490 24177290 ~ 24177694 (+)
G124121 LOC106605585 other upstream 500 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 267457 23861576 ~ 23881639 (+)
G123980 NA other upstream 323591 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1337830 22810767 ~ 22811263 (+)
apoc4 NA other upstream 1799157 22348543 ~ 22349936 (+)
LOC110538915 LOC106605649 other downstream 386204 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 718251 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 1222684 25377221 ~ 25396334 (+)
G125934 NA other downstream 1528080 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1895050 26049850 ~ 26050104 (+)

Expression


Co-expression Network