G124170


Basic Information

Item Value
gene id G124170
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24250939 ~ 24253089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU143455
GTATAAATGACCCCTAACCACTGATACTGTACATGGTCAGATATTTTCCATACTGTTCTTAGTTACAGTACAGTTATAATTCATGGCAGGTACTGTATAAtcagatcctagatctgtggttatgAGCTACTTAAATCTTGAGCCTTCAAGTGCAAATCAGAGAACCAGAGAATCTCTTAGGTTTTAGGCAATGGGAATGTGTTTTCTCACCTTAGTGAACATGGTGGTGTTCTGGCCATTCTTGCAGGCCTCCACATTCACCACATCGTAGTTGTTCTTCCTTTTGCAGCAGTGGGTGGGCCAGGGGTAGTCTGTACCAAACTTCTCCCTGAAGGTGGAGTTGTACTCTATCCAGTCCACTGGGCCATCCGTTCCACAACACTCCACCTGAAATAGGGTAGGAGAGGATGTTGTAGAAACAATAGTTGGGTGAGGAATATTCTTCAATCAAACAGGAATAGTTTAGTTGTTCAGTCGACAAACTGATGTTGTGACAGACTTAACTGACTTCACTCAAACTGAACGAGCTACTGTATAAGTATTTGTAGAACGTGTTACTGATACACATGTTTACTGTGACAATTGTCGACTGTGACCCTCAGCTCTACATTCTTTATCCTAGCTACATCAACACAGCCTGCAGTGGTTGTTTCTGTCCCTGTGCAGCAAACTGATCCCATCCCTTGTGTTTCCCACACTATTGGGCTGTCCAAACCGGTTCACCCAGCAGAGACGCAGCGTGACTCTGGCAttgatgatggagagagagggacatgctATGTCATGTCAGAGCTGACAATTCATCTGCTACTCCCaagggtgtgtgcgtgtgagtgtgtgactgtgtaagTGGAATGTGATACCTTTCCCTAACAGATATTCCACACAATAACCTAGGTTTAGTCCTTCTTCGTGCTAGTCATCTGTTTGGAATGTGTGGTGTGGCTCTGATTAGTCAGATTATCCTGACAGATTCCTTTGATTTGGTGACCAGTCACCTCTTTCATCACTTTGTTCCATGTCAGTGTGATCCGACTGCCAGAGTCACCATCGGCTGCATAGTACTTCAGCATCTGCTTCTTCACCAGATTACTGTTTCCAACCAGCTACAAACAGCACATAGGAGAGGATGAGACAAAACAGTAGAATACATTTAAGTTGTGTTTCTAGAATTGTGCTGGTCAAACAATGTGAAGATCTGAAGGTACCCCAAGGTGCCCATTTCCCACGTACTCACATAGTCTCTGTGGGTGACTGCAGTGATACACGAGGCACACTCAAATATGTAGATGATCAACATCAGGATCAGATACTGTCAAAatcacaaaatcaacattttcctTTACTTGAAAAGAAcaacagagaaagagatatagACATACCGTATATTCCACTTGAATTATATTTTTTCAGATGAACAAATGAAGAACTTCGGTGACCAAATAAATTGTGATGAATTTAGTATCATAGTCTTACTGTTAGCATTAAGGCACGGCTCTTCATCGCAGCAGCCAAGATACCAAAGACGCACATGCAGAAGAAGGCAAAGCCTGTGAAAATGGCAATCCAGGCCCCGGCAAAGATGTCATCTTTCCCCGACACACCAGATATAGGGTAGAGCTTGAATTGATCTACTGCAACCCAGATGGCCAGAGCGCAAAGGGCAAGACCTGCTGCCTATAATAAGGATGAGAATGACCATAAGACAGGTGAATCCCTTTCCATCAGCCATGGTAGCGGTCCTTCTGTCAGCTCCTTCTAAACCCACTGCTCCTgagcagagaagaagaagacagtGAAGAAATAACAGACCCAAGTACAAGTGTTCCTAACAGATCCAAGAGAATGTAGGGTCTGGCTGGATGTAATGTATTGTT

Function

NR:

description
uroplakin-1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143455 True 1877 lncRNA 0.42 2 24250939 24253089

Neighbor

gene id symbol gene type direction distance location
LOC110538747 LOC106578439 coding upstream 12261 24201099 ~ 24238678 (+)
LOC110538727 LOC106605639 coding upstream 50705 24190890 ~ 24200234 (+)
LOC110538661 LOC106605634 coding upstream 126125 24106644 ~ 24124814 (+)
tmem147 LOC106605633 coding upstream 169924 24077675 ~ 24081015 (+)
LOC100135863 LOC106577739 coding upstream 174714 24069369 ~ 24076225 (+)
LOC110538776 LOC106605668 coding downstream 7299 24260388 ~ 24270406 (+)
LOC110538793 LOC106605640 coding downstream 43078 24296167 ~ 24320738 (+)
LOC110538837 fbrl coding downstream 85636 24338725 ~ 24342581 (+)
LOC110538803 LOC106605641 coding downstream 90792 24343881 ~ 24467486 (+)
LOC118938711 NA coding downstream 216371 24469460 ~ 24472368 (+)
G124146 NA non-coding upstream 539 24245563 ~ 24250400 (+)
G124118 NA non-coding upstream 73245 24177290 ~ 24177694 (+)
G124117 NA non-coding upstream 73788 24176846 ~ 24177151 (+)
G124139 NA non-coding upstream 78465 24172170 ~ 24172474 (+)
G124132 NA non-coding upstream 87038 24163695 ~ 24163901 (+)
G124175 NA non-coding downstream 2656 24255745 ~ 24256051 (+)
G124176 NA non-coding downstream 3107 24256196 ~ 24256496 (+)
G124225 NA non-coding downstream 71209 24324298 ~ 24324536 (+)
G124228 NA non-coding downstream 74850 24327939 ~ 24328279 (+)
G124229 NA non-coding downstream 75708 24328797 ~ 24329007 (+)
G124121 LOC106605585 other upstream 102346 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 369303 23861576 ~ 23881639 (+)
G123980 NA other upstream 425437 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1439676 22810767 ~ 22811263 (+)
apoc4 NA other upstream 1901003 22348543 ~ 22349936 (+)
LOC110538915 LOC106605649 other downstream 287915 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 619962 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 1124395 25377221 ~ 25396334 (+)
G125934 NA other downstream 1429791 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1796761 26049850 ~ 26050104 (+)

Expression


Co-expression Network