G124272


Basic Information

Item Value
gene id G124272
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24493902 ~ 24513744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU143569
ATCTAGAAAATGCTCCAAGGGGTGCACAAGTTGAAAATGAAGTagtatttgtctttatttttagaAGATGCCACATAAAACAGCACAGAGGTCACAGacatagaaagaaaaaaaaaatgatccTATAAGATACCAGGGACATCTGCAAAAAGACAGGGAGATactggagaaaaaaaagagaagggAGAAGTGAAATCTATCTCTGAGTTTACAAAGCGAGAACAAAGAAACAAGAGAAGGCAATGGAAATGTAACCAATGGAATAGAAGACAGACTTTAAAGAGAACAGTTGCAATGGATACCTACCTATCAGGcaacacaccacctcagtcaccagatGACTTGCAGCCAGAACATGAGGCTAACATACCTGCCCCTAACTCACCTGCCCTGATACCCCTTCCTCATGGTCTGCAACAGGAATGAGAAGTTGAATACTTGCTGGAAGGAAAAAGGTTGGAAGAGGTCGCTCAATGCAGGGATGGGATATACCTCAACTTCAATAGAGGAGTCACTACCGTGTGAATGTTCTCTTTTGCTTTGAAATTGTACTCCAAATGTTACCTTTATCCACACTGATGCATCAagaagattgaaatactgctaGTTTTCCCAAAAAACTTTCCTTTTCGACctcatgctagctagcagtagTCACCGCAGCCATTTTGGAATGGCAGTGTCAGCCAAACAGCTCCTTTTGTTGTTCATTCTATAATAGCTGCTGTGGCTACTGGTAGCTAGCATGAAGACAAAAAATGGCAGTTTTCCAGGAAAAGtagcagtatttcaatcttctTGATGGAACAGTGTGGATAAAGGTCCAATTTTGACTACAATTGTATATCCTATCCCTGCATTGAGGTACGTTTTCCGACCCGTATCTCACGCCGGCTCCACAGTGTTTTCATGTGACCATGATTGAGTTCCAACCTCATTGTAAACAAGCGTAACGGTATGGTCAGTATCCTTTGGCAAGCTGCCATCACATCATCTGGCTTTGATGATCTTCTCTCAGAGACAAGGCCATTCCTCAAACTATTTCATAAAATGTCATATTGCATTCCATCTTTATGGTTAATTCAGTTAAGCCTGTACTCTATTTAAATCAGTGTGGGGCAGACAGTGATATGCTGGAGGACTCTTTGTGTGATGTCTATCAGGCTGAGCTGAGGTGCTCCTCTTATTTCAGGACAACCTCAGGGAGCCACAGGGAACTCTGGGTACTTTGTCGTGTGGGGCGTCCTTTGATttaggagaggaaggggagggagacacacctacctcacacaaAGACTAGCCAGCATTCCTTCTACACTGtactctctctatttctaccccccctctcttcctttctttgtCTTTCACTCCTTCACTtcacttaaaaatgtcagtgTTTGGTATCTAAAGTAATAGATGCATGCAGTACCTACTGCTGACAGACAATCTGACCAAATGGCCTGTTGGAAAGTGTGCCATAATGGGATCTAGGTATTGTTATGAAGTTGACTCTCCTGTTGCTCTTCTGTTCAGTATTATTTGATAGGATTTTCCGGGTTGAGGACTATCCCTTTCCTTTAGGGGCATTGTTCCTGTTACGATATCAATGTGCCAATATTCCTCTAGTATTTGGCAGCTTAGTGGTAACACTTTCAGCACCTGTAAGGAAATAGACCTAAATAGAGTGAAAACTAGTATATGTTTTTAGTATACATTACAAACTCAACCATTGCATTTTGAAGTTAGGATGCCATATTGCGtaggtagccctttcctgcagtcaaatgaccaaatcgccGTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143569 True 1803 lncRNA 0.42 2 24493902 24513744

Neighbor

gene id symbol gene type direction distance location
LOC110538847 LOC106578478 coding upstream 13739 24476290 ~ 24480163 (+)
LOC118938711 NA coding upstream 21534 24469460 ~ 24472368 (+)
LOC110538803 LOC106605641 coding upstream 26416 24343881 ~ 24467486 (+)
LOC110538837 fbrl coding upstream 151321 24338725 ~ 24342581 (+)
LOC110538793 LOC106605640 coding upstream 173164 24296167 ~ 24320738 (+)
LOC110538900 LOC106605648 coding downstream 12002 24525746 ~ 24532113 (+)
LOC110538915 LOC106605649 coding downstream 27219 24540963 ~ 24544247 (+)
LOC110538932 stx12 coding downstream 34651 24548395 ~ 24556963 (+)
LOC110538956 LOC106605651 coding downstream 54743 24568487 ~ 24570741 (+)
LOC110538967 LOC106605650 coding downstream 57340 24571084 ~ 24578116 (+)
G124270 NA non-coding upstream 1442 24480265 ~ 24492460 (+)
G124268 NA non-coding upstream 20339 24473274 ~ 24473563 (+)
G124249 NA non-coding upstream 119309 24374185 ~ 24374593 (+)
G124229 NA non-coding upstream 164895 24328797 ~ 24329007 (+)
LOC110534541 hace1 non-coding downstream 91330 24605074 ~ 24621417 (+)
G124363 NA non-coding downstream 194819 24708563 ~ 24708768 (+)
G124366 NA non-coding downstream 199318 24713062 ~ 24742173 (+)
G124437 NA non-coding downstream 330472 24844216 ~ 24844538 (+)
G124440 NA non-coding downstream 341893 24855637 ~ 24856057 (+)
G124121 LOC106605585 other upstream 345309 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 612266 23861576 ~ 23881639 (+)
G123980 NA other upstream 668400 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1682639 22810767 ~ 22811263 (+)
apoc4 NA other upstream 2143966 22348543 ~ 22349936 (+)
G124451 LOC106578403 other downstream 359307 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 863740 25377221 ~ 25396334 (+)
G125934 NA other downstream 1169136 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1536106 26049850 ~ 26050104 (+)

Expression


Co-expression Network