G125724 (LOC106605502)


Basic Information

Item Value
gene id G125724
gene name LOC106605502
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25459626 ~ 25460855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU145202
ACAAGGACATTTGTCAATGTGCTAAACTGACCTGCATTATAGCAGACATAAATTAACTTGATTTCAGTGCACTCAGGATCGCAATGTTCTGTCTGtaaaaatgcatttctatagcgtGTCTGTAAAGGAAACAGAAAGTTACAGTGAACACATCACCAATGAAGTCAGGTTGACATATTACAGGTTTAGTAATGCCATCAGGTTTGTGGCAAGAAAAACAACAGTGAAAAGCATAATGTACAGATTTTATATTCATACATCATATCATTGCAAGACAGCTGGGctgtctgagagaggagagaagattgGGCCCGATCATGTAGGTCTTGCGTTGCTTGTAGTGCTCTGAGATGTAGATCTTGTCGATGTGATTGTTGTTCTGGTTGTACTTCACCAACACCCTGTCCTGGTTGCTGAGGAGGTTGTCCTTGTCGTAGTACCGCCTCACTTCATAGGGCAGGTTCTCTGCACCGTGGGAATGGAGGTTACCAATGGTGTAGTAGGTGTACAGGTTCTGGTCTTTCAGTTTGGGGAGTAACAGTTTATAGTTCTTGAACATATGGAACCCGTATGCTCCCTCCCTGGGGTCACAGAGAGACACCATGTTGTTGTCGATGCAGGTCTGGACATACCAGAGGAGTAGTTTGAGGCCGTGGCGAGGGGGCGGGGTCCCGAAGCCAGTCTTCTCCAGCTCTTCATTCGTGTCCAATGTTCTCAAAGCCGAGGCCAGAGTGACGGCCAATAGCAGTAGCAGGATGCATCTCAGGACGCTGGTGTGATTGGCCATGCTGAACACCAATTAAGGGTTATCCCGCAATGTCGCTATAGGATGAGTCTGTAGGTTTAGCTTGCAGGTCTCTGCTCAAAGACTGTGGTATATGGTTGTGTTGGTCGCAGTGTTGCCCCTGACCCTTGCTGTAGCAGAGGAAGACCGGGTTCTGT

Function

NR:

description
uncharacterized protein LOC110539089

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145202 True 942 lncRNA 0.47 2 25459626 25460855

Neighbor

gene id symbol gene type direction distance location
LOC110539045 mrap2 coding upstream 45251 25403433 ~ 25414375 (+)
LOC110534557 LOC106605501 coding upstream 63292 25377221 ~ 25396334 (+)
LOC110534548 LOC106579462 coding upstream 133970 25294643 ~ 25325656 (+)
ascc3 ascc3 coding upstream 168102 25151016 ~ 25291524 (+)
LOC110538989 NA coding upstream 736253 24685282 ~ 24723373 (+)
tsnare1 LOC106605505 coding downstream 370548 25831403 ~ 25974877 (+)
LOC110539113 LOC106605506 coding downstream 638288 26099143 ~ 26113953 (+)
cdk14 LOC106605507 coding downstream 662858 26123713 ~ 26330981 (+)
fzd1 LOC106605515 coding downstream 862152 26323007 ~ 26326895 (+)
LOC110539173 LOC106605512 coding downstream 991826 26452681 ~ 26547503 (+)
G125686 NA non-coding upstream 25648 25433764 ~ 25433978 (+)
G125685 NA non-coding upstream 26024 25433382 ~ 25433602 (+)
G125684 NA non-coding upstream 27191 25432200 ~ 25432435 (+)
G125683 cep162 non-coding upstream 29380 25429742 ~ 25430246 (+)
G125675 cep162 non-coding upstream 37007 25422012 ~ 25422619 (+)
G125729 NA non-coding downstream 4247 25465102 ~ 25465351 (+)
G125752 NA non-coding downstream 19866 25480721 ~ 25480930 (+)
G125787 NA non-coding downstream 53420 25514275 ~ 25514509 (+)
G125797 NA non-coding downstream 60801 25521656 ~ 25521931 (+)
G125819 NA non-coding downstream 79326 25540181 ~ 25540544 (+)
G124451 LOC106578403 other upstream 585792 24873051 ~ 24873834 (+)
LOC110538915 LOC106605649 other upstream 915400 24540963 ~ 24544247 (+)
G124121 LOC106605585 other upstream 1311033 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 1577990 23861576 ~ 23881639 (+)
G125934 NA other downstream 222025 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 588995 26049850 ~ 26050104 (+)
G126727 LOC106581475 other downstream 1165994 26626849 ~ 26628649 (+)
G127190 cf113 other downstream 1333355 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 1396843 26857698 ~ 26861242 (+)

Expression


Co-expression Network