G125930 (LOC106605503)


Basic Information

Item Value
gene id G125930
gene name LOC106605503
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25674931 ~ 25732039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU145416
CAACAACCAtccaataaaaataacaaataaaataatcatattaaaaataacaaataaaaaaatagtttGTGACAGTATCATCAAGGTGAAATGTGTCAGAGTGACAACCGGGTGAAGAATGATTTACCTCTCTGCGCAGGATGCAATGCACCATGACGATGACGAAGCCTTCCAGCGAATCAAACACAGCGAACAAGATCTGGAAGAGGGAGGAGCGCCGGTCGGTGATGGCCAGGACAGCAGACATCCAGGTGAGGGCCAGGAGAGGCAGAACCACACAGGAGCTCCACAGCGACGccATGGCGTTACTGGTAGCTGTGGTAGAAACGTCAGCCGACGAGATAACTCCGCACTTGGCACATTTGAGCGTCATATTGTACAGTGGTACTGTCATCTGACTGCAAAGTAGTCAAATTAACACACGCTGTAACATAATACACACAgatgcaaatacacacacacacacacacacacacacacacaaacttacacTCAGAGTGAGTcacagttccctctctctctctctagctctctctctctctctctctctctctcagggctaaGGGGTATGTGTGGGGGCTGGGCCGGACAAGATACACAACCACATGGGTGGATATGTCACTAAAGGTTAATTTATTCCTCAATGATTGATCACTGCTCCTACTATATgtgaacacaacaaacgtatagGGGATCCTAACCAACACCGAGTGAGTGGGATAATCAAGTCAACAAAGACACTACTGCATTATTCGAATCATCTTGAGTCTGTGCAGAAAAGTGCAGTGACACTGTTGCACATGATGTAGCTCAAACTAGTGATTCAAAATATGATTCATAAGTGGTTAAGGTAGCCAAGCTGTTCAGaggttaggccagtaaccgaaaggttgctggttcgaatccctgagctgactaggtgaaatctgccaatgtgcccttgagcaaggcacttaaccctaattgctccagtcagtcactctggttaagtgtctgctaaatgaccaacatgTAAGAAGAGAGATACATGTGTAACTTGTGCAGGTCCGATTCTTATTGGCCAGGCACCTGTATGTGCACTGGCATGAATACACATTATATTTCCCTTCTTCATCTTATTATTCACATTGTTGAATCCTTCATTTACGTGCATTCAGCTAAATAATGATGGTATTCTTATAAATGAATAAAGCAAATGTCTAATTAGAGACACTTCATGTGCCAATTCATGCTTTGCGTCTCAGTTGCGTTGTTTATTTAGCTTCCTAAATGTAATTGCTGTGAATATTTTCACCCCTGGTTATTTCTCCCTACGCCTCACTGGTCAGACTGATTACTTTATACAGGCATTGCTGAACACCCTGCTAAtgctctcacgcacacacacgcacacacacatgcacacacacactcatgtaggCATGTACATACATGCAagcacccacatacacacacaaacactcaaacacacgcacgcacaaacaatGAACTCAAAGTAGTGAGTCGTGACAGGCCTCCAATTAACCAATTAacagtgtgtttatgtgtgttcatTACCAGGTGTATATCTTTGAATGTGTGTAcgttgagtgtgtgtttctgcatgGCTGCATTTGAACAACACAAAGGATAGACAATGAATTCTAAAGATTTCCTGAGAAGCTGTTTCTCCACTGGTACTGTAATCCACGAATACTGTAGAGAATCATCCCAGTTCCCATCTAGCAGTCTATTTATGTGTCACCCCACTTCTCCAGTGTCTGTGCTgtcatctaatctcctctcatCACATCACAAAGCCCAGTGTGGCTGTggcctgcctctctctgcctggaTGCCTGGCTGGAAGTAAGAGACAGAGTACAATCTCTACAATGCCTCTTCATCATGGATGACATACTGTCTGAGAAATAATACAGCAATAATACACGAGAGGGTATGTGATTACTGAGATTATTATCAGGACGTGATGCAACAATAAACTGTCCATCCCTACTTCAACACAATGGCTTGAAAGCTGTTTCATTAGATTAAAATACTCCCACAAGAAACACACATCTAGAAGAAACAGAGTTCGAGAAGAACAGTGTCACAAAATGGCCGCTCGTAAAACAACAATTAAACCATCGATTCCATATAGCCGCTGGACAGACGGATTAAAAATCACATTATAACAAATTCCATTTCAAGAAAAAAGGCAATACaaccaacacccc
>TU145417
CAACAACCAtccaataaaaataacaaataaaataatcatattaaaaataacaaataaaaaaatagtttGTGACAGTATCATCAAGGTGAAATGTGTCAGAGTGACAACCGGGTGAAGAATGATTTACCTCTCTGCGCAGGATGCAATGCACCATGACGATGACGAAGCCTTCCAGCGAATCAAACACAGCGAACAAGATCTGGAAGAGGGAGGAGCGCCGGTCGGTGATGGCCAGGACAGCAGACATCCAGGTGAGGGCCAGGAGAGGCAGAACCACACAGGAGCTCCACAGCGACGccctggaggatgggaggggaacAGCAGCCCAGGGTAAGCATTACAGACATGGGATTCAATGATACTAAAAACTACATGCAACTTTGTATTTACAATAGAAGCATGTCAAATTTAATACATACAATATCTACTCCTAAAAAAGGCATCTATGTACTGCATGTTGCCCTCGTTGTTGAAATGATTATGTACAGTATAATAAACCTATAACAAGGTATAGGTATATAGCCTGATGTTTTACATATACTTACAGTAGCTACCGTAAATATGCTAAtatcacacacaaaaacatacatcCATAATCAATTGAAATATATGTTCCATAACTGACATATACAATATGCATGTACGTTTAGGATGTGTCAATAAAACATATGAGACCAAGagcaacaggaaaaggaggagctGAGGTGAGTAAAGGAggaacaaaagtgaaatgaagCAAAGAAACGTAACATAAAGACAAACGCAAGAGGCAGAGGGCAGAGGTGTGATTAAGTGGACAGGGACTTGTCTTCTGGTCCATATGTTCCTACAGGACAATGTCTTTCTTTCCCTAACTCCTCAACTCTTCAGAGTCTTTGTTTTACATGTCCACTTGTTAACTCTGTCCTGAGTTGATGGAATGAAAGGTTTCTAGGTGTTGTTTAAAACAGATCCAAGCATTCAGACATACTCCCACTGAATAACACATTACATAAAATATAGCTACACAGGCCTGGCAGGCCTGGCAACAGAAACCCaaagcacatgcacacacacacacgcacacgcacacgcacacgcacacacacacacacacacactaattgatAAGTCAAGTGCACTGCCCATGAAAACCTCCTCCATGCGGATACAGATGTAGAGTCACTGTATCCATCCCATAGCCTGGGGGCATTACATAGCTGAAAGCCACTGAGCCTTGCACTTTTACTCTGGCCTATATTAAAGCTGCTTTTCTGCTGTCTGtgcttcacacagacacacacacacagacacacacacacacaccatatcttACAAGAACAGCACTGTATAACTAATTCCCAATGATTCTCACGAGGGTACAGGGGAAGAGAGGAAACGAAAAGGAGGGAAACAAAAAGATATAaacaagaggaggaggaagaaggaggaggaggaagaggaggaggaggaaggaggaggagaaagaggaagattGCACTCAGAGGTCCAGTGATCTGTCCATGATTGTGTGTGTCAGTC

Function

NR:

description
PREDICTED: brain-specific angiogenesis inhibitor 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145416 False 2216 lncRNA 0.53 2 25674931 25678352
TU145417 True 1521 lncRNA 0.41 2 25674931 25732039

Neighbor

gene id symbol gene type direction distance location
LOC110539045 mrap2 coding upstream 260556 25403433 ~ 25414375 (+)
LOC110534557 LOC106605501 coding upstream 278597 25377221 ~ 25396334 (+)
LOC110534548 LOC106579462 coding upstream 349275 25294643 ~ 25325656 (+)
ascc3 ascc3 coding upstream 383407 25151016 ~ 25291524 (+)
LOC110538989 NA coding upstream 951558 24685282 ~ 24723373 (+)
tsnare1 LOC106605505 coding downstream 99364 25831403 ~ 25974877 (+)
LOC110539113 LOC106605506 coding downstream 367104 26099143 ~ 26113953 (+)
cdk14 LOC106605507 coding downstream 391674 26123713 ~ 26330981 (+)
fzd1 LOC106605515 coding downstream 590968 26323007 ~ 26326895 (+)
LOC110539173 LOC106605512 coding downstream 720642 26452681 ~ 26547503 (+)
G125925 NA non-coding upstream 4037 25669061 ~ 25670894 (+)
G125902 NA non-coding upstream 48535 25626191 ~ 25626396 (+)
G125895 NA non-coding upstream 57990 25616524 ~ 25616941 (+)
G125856 NA non-coding upstream 81935 25592662 ~ 25592996 (+)
G125819 NA non-coding upstream 134387 25540181 ~ 25540544 (+)
G125997 NA non-coding downstream 94160 25826199 ~ 25833719 (+)
G126021 NA non-coding downstream 133651 25865690 ~ 25866121 (+)
G126341 NA non-coding downstream 283777 26015816 ~ 26016025 (+)
G126375 NA non-coding downstream 305590 26037629 ~ 26038230 (+)
G126418 NA non-coding downstream 356193 26088232 ~ 26093529 (+)
G124451 LOC106578403 other upstream 801097 24873051 ~ 24873834 (+)
LOC110538915 LOC106605649 other upstream 1130705 24540963 ~ 24544247 (+)
G124121 LOC106605585 other upstream 1526338 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 1793295 23861576 ~ 23881639 (+)
G126387 LOC105417071 other downstream 317811 26049850 ~ 26050104 (+)
G126727 LOC106581475 other downstream 894810 26626849 ~ 26628649 (+)
G127190 cf113 other downstream 1062171 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 1125659 26857698 ~ 26861242 (+)
LOC110485212 LOC106605536 other downstream 1416137 27147880 ~ 27175747 (+)

Expression


Co-expression Network