G126890


Basic Information

Item Value
gene id G126890
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26293279 ~ 26320696 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU146438
TTTATTTATTTCAGGTAAACCAACAATAAACAACATTTACAGAAGGACATTACATCTTCCATAATAACATTACATACAGGTCGTAACAAATAGGTAATGCAACAGCTATTCTACTATTATATCCTAAGTTTCAGTTTATAAAGTGACCGGTAACACTTCTTCTATGTCCGAAACCACTTGTGAAAAATGATGTATTTTCAGAGCATCATACAAAAAAGAAAAAATAGATACGCAAAGagaagctttttttttttgtactgtaAAACACAGATTCAGTGTTGAGTACAGCGGGGGTTGCATGTCTGGTTCCAAAACGCCTTTCCCAACATATACTGTACGTCTGCGCAGTTAAGAAACTGACAAGGCCaaaaaaatactgtatgtgtatatatccATATATATTTAATACGAATCCTCTCTTTTATGGCGCAAAGGAGACACGCGTGACCCTGTATGTACGCAAACATAGTACAAGCGTCACTATTAAATTTTACACAAGGCGTTTCACCTCCCCTTTTACATACAGCCTAGTGAGACGGTTTATAACAAAGGATACAAAATGATTAAATATTGACATGTATCTCGAAATATGACTCAGAATGTGCACATTCCGTAGCGTGACCAGTATAGCAAACAGATCCATCTTAAGCCATTCCCCAATTCAGATTTGAATGGTGTATTTGTAAATGCATTTTATTAAACATCTGGAAGTTAACTTTACAAGCAAGAACCAATGGTAACATTAAAATGATAGCAGGCCCCATTAAAATGTTAATATTTTCGACCACCACAGTGCTCAATGTGCAATTTCACTACTTCTTTCCCAAGATTTCCCTTCATAGAGAAAATGCTTTTTGTTCCCAAAGGAGAAAAAAAGAGCTTTCAGGAACTCCACCtacgcaggcaggcaggtagtccaaaacatatacagtattttcATGTTTATGTGATGTCGCAGGCAGGAGGCAAAGGAAGAAACTTCTGGGACACAAAGGCACAAAATAAAAAGGGGGAGAAAGAAAAGTGATATGCCACACAGAAAGCAGGAGAGTAACGTATCAACAATAATTATTCAGCTACTAATACCTTAGTATCCCATAAAGCCATGCAAGGCCGAGAAGAGCGAGCTGGGCGATCTATCTCAGCAGAGCTCTCAGGTATTTACCCTCCTCTGTCACGCTGCTTTAGTCACATTAAGACGCCACTCTACTCTCCACCCTTCCTCACCGTCTTCACTACCACAACACAGAATCACTTGCCCCACTAGGAATGACACTGAAGTTCTATGAAATCACTTCAAGTATTTGTAGTAGTTCTCCTTAAAAAGTCTCACTGGGGTTGGAAACTGGGGTCTGTTGGCCTATACTATGGTTGACAAGGGAGGGCACTGATATTTCTAGTCTGTGCAGGCAAGGGCATGTGATTAAGGACAACACAGGTGCAAAAAGTGACATTTTTAATAAGCTGGAATGTAAAGTAGGGCAAGTAGATTAAAAAAGTGCATTCTCAAAAAGCTAATGACATGATatcactgtgtttctctgtcgtTGCCTCGCCTGCTCTATATCACACCAAACACCACTAGATATGGTGGGACAAttaaagctgtaacataacatgGACTTGGCCATATGGCGAACTATGTCAAAGCCTTCTACAAGACTCCCTACAAGACTTCCTTTTAgcgtgtcctcctcctcctccctctatgaTAGACTAGCAGGTGAGGCAGGGGTGGAGAGGGACTGTGTGTGGCCTAGTGTCTACAGTATAATACCTGTGACCGTCTCTCATGTattctcatgtgtgtgtgttagtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtatttgtattgtgtgtgtagggaTGAATGTGTGTTTTGCCTCGCCTGTCGTTGCTTCATTCACATGCTCCATGATCCACTTATCAGAGGCCCTGTGGCCAC
>TU146439
TTTATTTATTTCAGGTAAACCAACAATAAACAACATTTACAGAAGGACATTACATCTTCCATAATAACATTACATACAGGTCGTAACAAATAGGTAATGCAACAGCTATTCTACTATTATATCCTAAGTTTCAGTTTATAAAGTGACCGGTAACACTTCTTCTATGTCCGAAACCACTTGTGAAAAATGATGTATTTTCAGAGCATCATACAAAAAAGAAAAAATAGATACGCAAAGagaagctttttttttttgtactgtaAAACACAGATTCAGTGTTGAGTACAGCGGGGGTTGCATGTCTGGTTCCAAAACGCCTTTCCCAACATATACTGTACGTCTGCGCAGTTAAGAAACTGACAAGGCCaaaaaaatactgtatgtgtatatatccATATATATTTAATACGAATCCTCTCTTTTATGGCGCAAAGGAGACACGCGTGACCCTGTATGTACGCAAACATAGTACAAGCGTCACTATTAAATTTTACACAAGGCGTTTCACCTCCCCTTTTACATACAGCCTAGTGAGACGGTTTATAACAAAGGATACAAAATGATTAAATATTGACATGTATCTCGAAATATGACTCAGAATGTGCACATTCCGTAGCGTGACCAGTATAGCAAACAGATCCATCTTAAGCCATTCCCCAATTCAGATTTGAATGGTGTATTTGTAAATGCATTTTATTAAACATCTGGAAGTTAACTTTACAAGCAAGAACCAATGGTAACATTAAAATGATAGCAGGCCCCATTAAAATGTTAATATTTTCGACCACCACAGTGCTCAATGTGCAATTTCACTACTTCTTTCCCAAGATTTCCCTTCATAGAGAAAATGCTTTTTGTTCCCAAAGGAGAAAAAAAGAGCTTTCAGGAACTCCACCtacgcaggcaggcaggtagtccaaaacatatacagtattttcATGTTTATGTGATGTCGCAGGCAGGAGGCAAAGGAAGAAACTTCTGGGACACAAAGGCACAAAATAAAAAGGGGGAGAAAGAAAAGTGATATGCCACACAGAAAGCAGGAGAGTAACGTATCAACAATAATTATTCAGCTACTAATACCTTAGTATCCCATAAAGCCATGCAAGGCCGAGAAGAGCGAGCTGGGCGATCTATCTCAGCAGAGCTCTCAGGTATTTACCCTCCTCTGTCACGCTGCTTTAGTCACATTAAGACGCCACTCTACTCTCCACCCTTCCTCACCGTCTTCACTACCACAACACAGAATCACTTGCCCCACTAGGAATGACACTGAAGTTCTATGAAATCACTTCAAGTATTTGTAGTAGTTCTCCTTAAAAAGTCTCACTGGGGTTGGAAACTGGGGTCTGTTGGCCTATACTATGGTTGACAAGGGAGGGCACTGATATTTCTAGTCTGTGCAGGCAAGGGCATGTGATTAAGGACAACACAGGTGCAAAAAGTGACATTTTTAATAAGCTGGAATGTAAAGTAGGGCAAGTAGATTAAAAAAGTGCATTCTCAAAAAGCTAATGACATGATatcactgtgtttctctgtcgtTGCCTCGCCTGCTCTATATCACACCAAACACCACTAGATATGGTGGGACAAttaaagctgtaacataacatgGACTTGGCCATATGGCGAACTATGTCAAAGCCTTCTACAAGACTCCCTACAAGACTTCCTTTTAgcgtgtcctcctcctcctccctctatgaTAGACTAGCAGGTGAGGCAGGGGTGGAGAGGGACTGTGTGTGGCCTAGTGTCTACAGTATAATACCTGTGACCGTCTCTCATGTattctcatgtgtgtgtgttagtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcacacACACGTCTTTCTAAGGGTGTCAGTGTGGATTAAGAAAACTAATCTCTCCTGATCGTCAGTGTGTGTCCATGATATCTCACTCAgaactctcctccccctctacttgTGAACAGTACAGGCCCATTCAGATTAGTGGTAGATTTCAAATCAATCCATAAAACAGGAACCCATATTCTCCATGTTACTGGTCATTGCTATATTACCTAGCTCACACATGACTAATATGAGCAGGTATTTTTATACACAACAACACCCAGTTGTAAATCGAACACAAAGAGATCTTTGTACCAGCCAATGAAACAAAACTATTTGTTAGATCAATATCACACGATATCAAAAAAAGTGCTCCTAGTAATTGTAATTGACGTGATAGCTGAGACCAACAGCCAATGACGTAATCGTGTAAAAAACATTTGTGATGACGTCTgatatacagtacactactgGACGGTGACGGTTCAAAGGAcgtgaaggagaagaggattgTCACGGGTCGAAGTAACCAAGAGATCAAAATCCCACTGAGCCTATTGCCATTGTGTTTTACCATCTAGATACAGTGCACAACAAGATAACAGTACCTCATGGCCTACATGGAAGCACCAATGAAGGGTATTGCCCATGTTTTGATGCACACGCAACCACACAGATGTAACACACCCACATACACTTGAGACGAACCACAGCGAATGTACCATATAACATGTGACTCTTCACGATGTCATCGACACTAATTGCTTTGTGTGTATGCATCATCTCCAGCAGAGACTAACGGATTATTATCACCAGTATCACTATTACAGTATTAGTACCATTGCTCTTATGATTATTATTGATTTGATGCCATTTGACCCTGGCCTGACAGTTACAGAGGAGGAACAGATCAAAGTTAAAGAGAAACATTACCACCGCTTGTCATTTTCAGTTCCAGTTTGTGTTGTGAGTGTGAGTGAAACTGTCCAGtgggtgtgtatctgtgtgtgtacgtgtgagtttgtgcatgcgtgcgtgaATGCATGCAAGTGCAGCATGTTTGTgaaagaatgtaagctttctcgGAGTCCGTGATATATTTTCTAAATATGagtatactgtacacacaaatatacattctcacataggtagtTAGAAACACAAGCCACAGTATGTATCAATAGTATTGTAAAGTCCCTTGATGATTAAGGGTATTGTAAATGTGTCAACGATATATGAGTATCATAACATTATAAAAGTCAACAAAAATTGCAAATTATAAAACTGAAATTGGAGGTGTCACCCACCAAAAtgtatacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaatgtcaggaattgtgaaaaa
>TU146435
TTTATTTATTTCAGGTAAACCAACAATAAACAACATTTACAGAAGGACATTACATCTTCCATAATAACATTACATACAGGTCGTAACAAATAGGTAATGCAACAGCTATTCTACTATTATATCCTAAGTTTCAGTTTATAAAGTGACCGGTAACACTTCTTCTATGTCCGAAACCACTTGTGAAAAATGATGTATTTTCAGAGCATCATACAAAAAAGAAAAAATAGATACGCAAAGagaagctttttttttttgtactgtaAAACACAGATTCAGTGTTGAGTACAGCGGGGGTTGCATGTCTGGTTCCAAAACGCCTTTCCCAACATATACTGTACGTCTGCGCAGTTAAGAAACTGACAAGGCCaaaaaaatactgtatgtgtatatatccATATATATTTAATACGAATCCTCTCTTTTATGGCGCAAAGGAGACACGCGTGACCCTGTATGTACGCAAACATAGTACAAGCGTCACTATTAAATTTTACACAAGGCGTTTCACCTCCCCTTTTACATACAGCCTAGTGAGACGGTTTATAACAAAGGATACAAAATGATTAAATATTGACATGTATCTCGAAATATGACTCAGAATGTGCACATTCCGTAGCGTGACCAGTATAGCAAACAGATCCATCTTAAGCCATTCCCCAATTCAGATTTGAATGGTGTATTTGTAAATGCATTTTATTAAACATCTGGAAGTTAACTTTACAAGCAAGAACCAATGGTAACATTAAAATGATAGCAGGCCCCATTAAAATGTTAATATTTTCGACCACCACAGTGCTCAATGTGCAATTTCACTACTTCTTTCCCAAGATTTCCCTTCATAGAGAAAATGCTTTTTGTTCCCAAAGGAGAAAAAAAGAGCTTTCAGGAACTCCACCtacgcaggcaggcaggtagtccaaaacatatacagtattttcATGTTTATGTGATGTCGCAGGCAGGAGGCAAAGGAAGAAACTTCTGGGACACAAAGGCACAAAATAAAAAGGGGGAGAAAGAAAAGTGATATGCCACACAGAAAGCAGGAGAGTAACGTATCAACAATAATTATTCAGCTACTAATACCTTAGTATCCCATAAAGCCATGCAAGGCCGAGAAGAGCGAGCTGGGCGATCTATCTCAGCAGAGCTCTCAGGTATTTACCCTCCTCTGTCACGCTGCTTTAGTCACATTAAGACGCCACTCTACTCTCCACCCTTCCTCACCGTCTTCACTACCACAACACAGAATCACTTGCCCCACTAGGAATGACACTGAAGTTCTATGAAATCACTTCAAGTATTTGTAGTAGTTCTCCTTAAAAAGTCTCACTGGGGTTGGAAACTGGGGTCTGTTGGCCTATACTATGGTTGACAAGGGAGGGCACTGATATTTCTAGTCTGTGCAGGCAAGGGCATGTGATTAAGGACAACACAGGTGCAAAAAGTGACATTTTTAATAAGCTGGAATGTAAAGTAGGGCAAGTAGATTAAAAAAGTGCATTCTCAAAAAGCTAATGACATGATatcactgtgtttctctgtcgtTGCCTCGCCTGCTCTATATCACACCAAACACCACTAGATATGGTGGGACAAttaaagctgtaacataacatgGACTTGGCCATATGGCGAACTATGTCAAAGCCTTCTACAAGACTCCCTACAAGACTTCCTTTTAgcgtgtcctcctcctcctccctctatgaTAGACTAGCAGGTGAGGCAGGGGTGGAGAGGGACTGTGTGTGGCCTAGTGTCTACAGTATAATACCTGTGACCGTCTCTCATGTgtgtgtgtgtgtttgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcacacACACGTCTTTCTAAGGGTGTCAGTGTGGATTAAGAAAACTAATCTCTCCTGATCGTCAGTGTGTGTCCATGATATCTCACTCAgaactctcctccccctctacttgTGAACAGTACAGGCCCATTCAGATTAGTGGTAGATTTCAAATCAATCCATAAAACAGGAACCCATATTCTCCATGTTACTGGTCATTGCTATATTACCTAGCTCACACATGACTAATATGAGCAGGTATTTTTATACACAACAACACCCAGTTGTAAATCGAACACAAAGAGATCTTTGTACCAGCCAATGAAACAAAACTATTTGTTAGATCAATATCACACGATATCAAAAAAAGTGCTCCTAGTAATTGTAATTGACGTGATAGCTGAGACCAACAGCCAATGACGTAATCGTGTAAAAAACATTTGTGATGACGTCTgatatacagtacactactgGACGGTGACGGTTCAAAGGAcgtgaaggagaagaggattgTCACGGGTCGAAGTAACCAAGAGATCAAAATCCCACTGAGCCTATTGCCATTGTGTTTTACCATCTAGATACAGTGCACAACAAGATAACAGTACCTCATGGCCTACATGGAAGCACCAATGAAGGGTATTGCCCATGTTTTGATGCACACGCAACCACACAGATGTAACACACCCACATACACTTGAGACGAACCACAGCGAATGTACCATATAACATGTGACTCTTCACGATGTCATCGACACTAATTGCTTTGTGTGTATGCATCATCTCCAGCAGAGACTAACGGATTATTATCACCAGTATCACTATTACAGTATTAGTACCATTGCTCTTATGATTATTATTGATTTGATGCCATTTGACCCTGGCCTGACAGTTACAGAGGAGGAACAGATCAAAGTTAAAGAGAAACATTACCACCGCTTGTCATTTTCAGTTCCAGTTTGTGTTGTGAGTGTGAGTGAAACTGTCCAGtgggtgtgtatctgtgtgtgtacgtgtgagtttgtgcatgcgtgcgtgaATGCATGCAAGTGCAGCATGTTTGTgaaagaatgtaagctttctcgGAGTCCGTGATATATTTTCTAAATATGagtatactgtacacacaaatatacattctcacataggtagtTAGAAACACAAGCCACAGTATGTATCAATAGTATTGTAAAGTCCCTTGATGATTAAGGGTATTGTAAATGTGTCAACGATATATGAGTATCATAACATTATAAAAGTCAACAAAAATTGCAAATTATAAAACTGAAATTGGAGGTGTCACCCACCAAAAtgtatacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaattggaaAGGTAATAAGTTAAAGAAACAGAAGAGGGAATGTGATCCCGGTggttcctccatctcagtgtcTTTGTCCTTCTCTCTTGGACTGACCACAGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146438 False 1968 lncRNA 0.41 2 26293279 26320696
TU146439 False 3306 lncRNA 0.40 2 26298642 26320696
TU146435 True 3340 lncRNA 0.40 2 26317291 26320696

Neighbor

gene id symbol gene type direction distance location
LOC110539098 LOC106605503 coding downstream 503020 25669026 ~ 25790259 (-)
si:ch211-198c19.1 LOC106605502 coding downstream 832397 25459554 ~ 25460882 (-)
LOC110539072 cep162 coding downstream 849763 25428983 ~ 25443516 (-)
LOC110533704 cep162 coding downstream 865580 25417440 ~ 25427699 (-)
LOC110538828 grik2 coding downstream 1182696 24862906 ~ 25110583 (-)
LOC110539162 LOC106605511 coding upstream 230136 26550832 ~ 26559134 (-)
LOC118938772 cg024 coding upstream 256257 26576953 ~ 26579337 (-)
ggctb ggct coding upstream 265095 26585791 ~ 26588645 (-)
LOC110539269 LOC106579366 coding upstream 308880 26629576 ~ 26640996 (-)
LOC110539285 LOC106579350 coding upstream 321262 26641958 ~ 26675649 (-)
G126775 NA non-coding downstream 179336 26104122 ~ 26113943 (-)
G126386 NA non-coding downstream 243683 26049358 ~ 26049596 (-)
G126381 NA non-coding downstream 251183 26041892 ~ 26042096 (-)
G126327 NA non-coding downstream 288116 26004747 ~ 26005163 (-)
G126320 NA non-coding downstream 290959 26002099 ~ 26002320 (-)
G126928 NA non-coding upstream 11100 26331796 ~ 26331999 (-)
G126929 NA non-coding upstream 11332 26332028 ~ 26332285 (-)
G126930 NA non-coding upstream 12416 26333112 ~ 26333341 (-)
G126934 NA non-coding upstream 17902 26338598 ~ 26338831 (-)
G126944 NA non-coding upstream 38445 26359141 ~ 26359636 (-)
G125305 NA other downstream 1516652 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 1758750 24531424 ~ 24540898 (-)
G125043 NA other downstream 1968443 24324580 ~ 24324836 (-)
G125003 NA other downstream 2023143 24269226 ~ 24270136 (-)
LOC110538705 LOC106577653 other downstream 2131836 24144519 ~ 24172836 (-)
G127083 NA other upstream 240918 26561614 ~ 26562127 (-)
LOC110485245 ubr5 other upstream 950564 27231538 ~ 27278158 (-)
G129250 NA other upstream 1445461 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 1775986 27933389 ~ 28149986 (-)

Expression


Co-expression Network