G126664 (LOC106579390)


Basic Information

Item Value
gene id G126664
gene name LOC106579390
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26558016 ~ 26558636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU146190
GTCTGTCTTGGTGGCTGCGCGCTGGATGATTTCTGCATCCTCGATACACAGAAAACCACTTTGTAGGAGGTTATCCATAATGCACTGCGTGCTCTTCACCTGGGAAACCAGTAGCTCACGGTGCAAGGTGAGCATTTGGACAGTGGACACATGGCCCGTTAGTCCAGCACGGGCTTCCTCGGCACTGGAGTCCATAATATACATGGCTTCAGCTGCCTGTATTTACGTCAGAACCTTTGATAACATTGTTCTTAGCCGCGCTGTCCTAGTCCGCGGCGGAAAAACTCGGGAACCACAGCTCTCCCAAAAACAAATTCCAGTCTTGGTTATTAAACCATTAAATAGCGCATGACATGATAATAACAAAACGTTTCTCCAGGACTGTTAGAAAAGGAATCTAGTCCTGTCTCAAACAATGtcaggagaaaaaaaacactgaaCACAGTACTGGTTCTTTGAGGAAGTGAAACCAAAAACAGCCTTGGATG

Function

NR:

description
PREDICTED: nucleotide-binding oligomerization domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146190 True 488 lncRNA 0.46 2 26558016 26558636

Neighbor

gene id symbol gene type direction distance location
LOC110539173 LOC106605512 coding upstream 10513 26452681 ~ 26547503 (+)
cdk14 LOC106605507 coding upstream 227035 26123713 ~ 26330981 (+)
fzd1 LOC106605515 coding upstream 231121 26323007 ~ 26326895 (+)
LOC110539113 LOC106605506 coding upstream 444063 26099143 ~ 26113953 (+)
tsnare1 LOC106605505 coding upstream 583139 25831403 ~ 25974877 (+)
LOC110539182 LOC106605509 coding downstream 21122 26579758 ~ 26581796 (+)
LOC110539212 LOC106605509 coding downstream 23132 26581768 ~ 26585441 (+)
LOC110539196 LOC106605517 coding downstream 37629 26596265 ~ 26613437 (+)
trnar-acg-2 NA coding downstream 82531 26641167 ~ 26641239 (+)
LOC110485091 LOC106605521 coding downstream 180288 26738924 ~ 26741780 (+)
G126658 NA non-coding upstream 15999 26502808 ~ 26542017 (+)
G126679 NA non-coding upstream 30980 26525778 ~ 26527036 (+)
G126680 NA non-coding upstream 31014 26526699 ~ 26527002 (+)
G126607 NA non-coding upstream 79509 26460439 ~ 26478507 (+)
G126641 NA non-coding upstream 93093 26463484 ~ 26464923 (+)
G126694 NA non-coding downstream 2862 26561498 ~ 26562008 (+)
G126695 NA non-coding downstream 4411 26563047 ~ 26563342 (+)
G126748 NA non-coding downstream 101376 26660012 ~ 26661367 (+)
G127165 LOC106605523 non-coding downstream 201806 26760442 ~ 26761528 (+)
G127188 NA non-coding downstream 233392 26792028 ~ 26792291 (+)
G126387 LOC105417071 other upstream 507912 26049850 ~ 26050104 (+)
G125934 NA other upstream 800163 25682880 ~ 25757853 (+)
LOC110534557 LOC106605501 other upstream 1175704 25377221 ~ 25396334 (+)
G124451 LOC106578403 other upstream 1684182 24873051 ~ 24873834 (+)
LOC110538915 LOC106605649 other upstream 2013790 24540963 ~ 24544247 (+)
G126727 LOC106581475 other downstream 68213 26626849 ~ 26628649 (+)
G127190 cf113 other downstream 235574 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 299062 26857698 ~ 26861242 (+)
LOC110485212 LOC106605536 other downstream 589540 27147880 ~ 27175747 (+)
G127644 LOC106605534 other downstream 631355 27189991 ~ 27190593 (+)

Expression


Co-expression Network