G126727 (LOC106581475)


Basic Information

Item Value
gene id G126727
gene name LOC106581475
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26626849 ~ 26628649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU146263
CtgatgatacatttattacacaaTTCTTGAACACAACGATGTTTaaagtgacaaaaaaaaaacacaataataACAAATTAATATCCTGGAAAATAACTGCCCCAAAATAAATCCTCTGAAACAAAAACATGTGACAATAATATAGGCCTATAAAACAATAAAAACTGTGGTCCAGATTGTTTTCTTCATACTGCCTTGAGTCAACAGTAGCAACCCATTTTCATTGGTAAAGCAGTCAAACCAAAAAGATGTGTAAAACCGCTCAAACATGACTCAGCTTAAATATCACAGTCATTTGTATTGATCATTTTGCACATCATTCTTACAAGCATACAATGCTTTGTCATTACATTAAATTGTATCTAGGCTTACATGGCACCTAAATCATCTGTTTAAAAACACAGATCAGCAAGAGACACTATGCTGGCTGATTCTTGAATTTGATAGGCTTATGGCTGATAATGCACTGTTGTCCATTGGCATGGCAGCCGATGTGTACCTTGGGTTATGCTTTATCATAGTAACACCAATGTATTATTGGACCACAACATTTAAAGTTATAGGACATACATACTCTCTCATTGTCATTTTGCACCACTACAGTTGAAGTGGAAAGACACATAAGCGGCAATATAATCAATTTAATATTACAAATATTACATACTTTTTTCTTAACATTCTCAGATCAGCAGGTGCCACTCTGGCAGCAGGTAAAGTAAGTGTGATCCTGTAATGATTATGTACACTATAcaccagggttgggctcaatttaATTTCAATTCAGGAGGTAAACTGACATTCCCATTCCAATTAAACATGTTCTCAATGAGAATGTTGTGAATTGGAACTtaattcctgaattgactgaattcaAATGGAATTGGACCCAATCCTGCTACTAAACACCCCATCTCTTATAATGACCGGTGGTAAAGAAGCAGATTTTGACTTGGGGCTAGTGCCACAGAACAGCCAATAATCAAAAGATAAATAATATAGAGAAAGATTGTGTAAGAGAGAGCAACAGTTCACATTTCCATCCTGAGACACACTAAAACACTTAGAGATCGTCATAGAGGACAAGTGCCATTTAAAATTGCCAATGTCCCATGAGACTTTGTTTAAAATGCCCAGTTTGATCAAAAACTAGATTTTCCCGTgctttatatacactgctcaaaaaaataaagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccactgaggaagcaacactgattcacaataaatttcacatgctattgtgcaaatggaatagacaacaggtggaaattataggcaattagcaagacaaacccaataaaggagtggttctgcaggtggtaaccacagaccacttctcagttcctgtgcttcctggctgatgttttggtcacttttgaatgctggcggtgctttcactctagtggtagcatgagacggagtctacaacccacacaagtggctcaggtagtgcagctcatccaggatgacacatcaatgcgagctgtggcaagaaggtttgcagtgtctgtcagcgtagtgtccagagcatggagccgctaccaggagacaggccagtacatcaggagacgtgaaggaggccgtaggagggcaacaacccagcagcaggaccgctacctccgcctttgtgcaaggaggagcaggaggagcactgccaaagccctgcaaaatgacctccagcaggccacaaatgtgcatgtgtctgctcaaacagtcagaaacagactccatgagggtggtatga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146263 True 1801 TUCP 0.46 1 26626849 26628649

Neighbor

gene id symbol gene type direction distance location
LOC110539196 LOC106605517 coding upstream 13412 26596265 ~ 26613437 (+)
LOC110539212 LOC106605509 coding upstream 41408 26581768 ~ 26585441 (+)
LOC110539182 LOC106605509 coding upstream 45053 26579758 ~ 26581796 (+)
LOC110539173 LOC106605512 coding upstream 79346 26452681 ~ 26547503 (+)
cdk14 LOC106605507 coding upstream 295868 26123713 ~ 26330981 (+)
trnar-acg-2 NA coding downstream 12518 26641167 ~ 26641239 (+)
LOC110485091 LOC106605521 coding downstream 110275 26738924 ~ 26741780 (+)
LOC110485092 LOC106605522 coding downstream 118322 26746971 ~ 26765817 (+)
rwdd1 rwdd1 coding downstream 141815 26770464 ~ 26779479 (+)
LOC110485096 LOC106605526 coding downstream 184835 26813484 ~ 26823336 (+)
G126695 NA non-coding upstream 63507 26563047 ~ 26563342 (+)
G126694 NA non-coding upstream 64841 26561498 ~ 26562008 (+)
G126664 LOC106579390 non-coding upstream 68213 26558016 ~ 26558636 (+)
G126658 NA non-coding upstream 84832 26502808 ~ 26542017 (+)
G126679 NA non-coding upstream 99813 26525778 ~ 26527036 (+)
G126748 NA non-coding downstream 31363 26660012 ~ 26661367 (+)
G127165 LOC106605523 non-coding downstream 131793 26760442 ~ 26761528 (+)
G127188 NA non-coding downstream 163379 26792028 ~ 26792291 (+)
G127202 NA non-coding downstream 196663 26825312 ~ 26825904 (+)
G127209 NA non-coding downstream 199599 26828248 ~ 26828451 (+)
G126387 LOC105417071 other upstream 576745 26049850 ~ 26050104 (+)
G125934 NA other upstream 868996 25682880 ~ 25757853 (+)
LOC110534557 LOC106605501 other upstream 1244537 25377221 ~ 25396334 (+)
G124451 LOC106578403 other upstream 1753015 24873051 ~ 24873834 (+)
LOC110538915 LOC106605649 other upstream 2082623 24540963 ~ 24544247 (+)
G127190 cf113 other downstream 165561 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 229049 26857698 ~ 26861242 (+)
LOC110485212 LOC106605536 other downstream 519527 27147880 ~ 27175747 (+)
G127644 LOC106605534 other downstream 561342 27189991 ~ 27190593 (+)
LOC110485466 LOC106605529 other downstream 673429 27288172 ~ 27303644 (+)

Expression


Co-expression Network