G127198 (LOC106605538)


Basic Information

Item Value
gene id G127198
gene name LOC106605538
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26857698 ~ 26861242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU146788
CACACAGCAGTGACTTGAATGGAATTGTCTGTTCTAGTAATTCAATTTCTATGGTTGTAGGCAGTCTCTGGTATCTGATTGACTTGATTGGACTCGAGGATCAAAGATCAGGGTGCAGTATGACACAACACGCGACTTAGCACTGTCTCAACTGGGATTACTGTTTAACTTTCTAACATAACTAATACAGAGACCGGGAAGGATGATCCCAGAAGTTGGTACAGTTGGTGATGCCATAATACTGTTTTAACAATGtctaggctacagtacactacaccagCAAGGTTAGCTGCTCATGCAAAGCCTGTTATGCATGCATACACACTCCACTCAGATCATCATACAATCATATTGATGTTCAATATCAGACACATTTTTCTGTTAAGTAATTTCACCCTTCTTCCTCCTCATACCATCTATGAACATGCAGCCACTTCTGTTTTTCCACGACAAAGTCTTTGTAGTGCACTTAATTAAGGAAAAATGTATACATGTTTTGCTAAAATAGTAAAGACTCACCATAATGCCGACGAAAAGAGTGTCCATGTGCCAGACATAAAGAGAGAACTGCAATTTTGCTGCTCTCGGTTTTTGTGGCTACTTTTATGCCttggtggtgtggtggtattGTGAAACAGTTTTTATATATTGGTTAACACTTGAAAATGTTATTTCTAAAGAATCCCAGATGAAAAAGATTAAGGAAACATATAGTGCGTCAAACCAGATTTATTTGCTGTTTCATGTAGATATTTGTGTGTGAacgagagagaaaatgagagagagagacattgagagagaatggaggaaagtgagggaggaagaaagatacagaaagagagagagagagagaggcagagtgttGAGGCTATATCAGATGCCAAGAACTCACAGGGTTTCTGGAATGTTTTGCTTAGAGGGAAAGAATCCAGAAAAGTTACAAGTTAACGTCAGGAAAAAAGCTAAACAAAGCCAGACTCCACTGATGGGATCACATACAAGATACACATTATAGAACTGTCTTTTAACAGTGGTGATGAAAAGAGGTGCTCTCAGTCCTTCTTGAGATGGGCCACTTCATGAAGGTACGCAATGAACAACTTGGTCCCCTCTATGTAGTTGTTCATCTTCTCGTTCTGGGAGTGGAGGCCGTCGTCGAAGCCTCCGATAGGCATCATGATGATGCTCTTCCCGGTCACGTCCTCAAAGGTCTTGGCGATGGGGATGGTTCCCCCTTCACGGATCAGGTCTGGCTCCACGTCAAACCTCTCTTCACGGCTGCTTTCCCTGCCTCGTACAGGGGGTGCTTGGTGTCTGCTAACCAGGGCTTAGCCCCGATGATCATGGTCACCTTCAGCTTGTTGGGGCTCTTTCTCTTGGCAAACACAGAGTACAGGTAGTCTGTGACCTACAACAGAACAAATATGTAACAGGCATACATGCAGTCTTCACGTCTATTTCATTAACTGAAACCAAACTGAAATAGTGAGAACAATTCCAGAAATGTGTGTGAACTGTGTGTAACTGCATGTAACTGTGTTTGTTGCAACTGCACAATGCACTGGGTGAGAGGCGTGTACCACCCACCTGTTTCTTGACCACTGCTGGGTCCATGTTGGGGACCTGTCGGATGGAGAACTTGGCAATGACCTTAGCAGGGATGACCGTCTTAGAGCCAGGGCCAGAGAAGGCTCCCTCGATTCCATGGATGGTAACGGTAGGGTAACGCCAACGATGGGCCAGCAGATCTACCTGAGATCAactcttatttgtcacatgcaccgagtACAACAAGTgcagactttaccatgaaatgctaaCTTATGAGCCCTTTCCTAACAAGGCAGTTAAAAAGTACGAAAATGTAAAAATGGATAAAAgacaataaaataacacaataaaaaaaacataacaaaaattaacaataacgaggctatatacatgctGGCTATAtacaaacagagaaacagagataggagGAGCGAAAACCTTAAAAGAACAAAAAAAAATTATCCACTCCCCTGTGCATCACCTTGTTGCTGTACATGAGTTGGCTGACGCCAATCTTGGACTTAAAGCTCTCAATGTCAAACTCAATGTCCTGGTACATCTTCCACTCTTCGTCTGAGAGTGGGGCGACGGCCTCTCTGATGCCTGGAATGAGGATCTTTCCACTGGGGCTGATCAGTGTGTCTGGGGGGAGACAtaggCCCAATATGCCGATCAGATCTGTCATAGGCTCTATAACTGTACCTCCATACACCCCTGAGTGTAGGTCCTGTTTTGGGCCCTACCTCAGCAAAGAAGTAGCAGTTCCCCCTGGTCCCGTAGGTGAGGGCGGGGCGTCGGCTCAGCCAACCACAGTCTGAGATGATGATGTAATCGACATCGGAGAAGAACGTGTCTTTCTGCGCCACGATCATGGCGTCCAGGCCATTGGACCCGGTCTCCTCCATTCCCTCGATGATGAACTTCACATTGACTGGCAGGTCCTGCATGGGGAGAGGgcagggggtggagaggaggaggagggggaaaaaaatgttaTAACAAAGGAA
>TU146789
CACACAGCAGTGACTTGAATGGAATTGTCTGTTCTAGTAATTCAATTTCTATGGTTGTAGGCAGTCTCTGGTATCTGATTGACTTGATTGGACTCGAGGATCAAAGATCAGGGTGCAGTATGACACAACACGCGACTTAGCACTGTCTCAACTGGGATTACTGTTTAACTTTCTAACATAACTAATACAGAGACCGGGAAGGATGATCCCAGAAGTTGGTACAGTTGGTGATGCCATAATACTGTTTTAACAATGtctaggctacagtacactacaccagCAAGGTTAGCTGCTCATGCAAAGCCTGTTATGCATGCATACACACTCCACTCAGATCATCATACAATCATATTGATGTTCAATATCAGACACATTTTTCTGTTAAGTAATTTCACCCTTCTTCCTCCTCATACCATCTATGAACATGCAGCCACTTCTGTTTTTCCACGACAAAGTCTTTGTAGTGCACTTAATTAAGGAAAAATGTATACATGTTTTGCTAAAATAGTAAAGACTCACCATAATGCCGACGAAAAGAGTGTCCATGTGCCAGACATAAAGAGAGAACTGCAATTTTGCTGCTCTCGGTTTTTGTGGCTACTTTTATGCCttggtggtgtggtggtattGTGAAACAGTTTTTATATATTGGTTAACACTTGAAAATGTTATTTCTAAAGAATCCCAGATGAAAAAGATTAAGGAAACATATAGTGCGTCAAACCAGATTTATTTGCTGTTTCATGTAGATATTTGTGTGTGAacgagagagaaaatgagagagagagacattgagagagaatggaggaaagtgagggaggaagaaagatacagaaagagagagagagagagaggcagagtgttGAGGCTATATCAGATGCCAAGAACTCACAGGGTTTCTGGAATGTTTTGCTTAGAGGGAAAGAATCCAGAAAAGTTACAAGTTAACGTCAGGAAAAAAGCTAAACAAAGCCAGACTCCACTGATGGGATCACATACAAGATACACATTATAGAACTGTCTTTTAACAGTGGTGATGAAAAGAGGTGCTCTCAGTCCTTCTTGAGATGGGCCACTTCATGAAGGTACGCAATGAACAACTTGGTCCCCTCTATGTAGTTGTACCTGCTCATCTTCTCGTTCTGGGAGTGGAGGCCGTCGTCGAAGCCTCCGATAGGCATCATGATGATGCTCTTCCCGGTCACGTCCTCAAAGGTCTTGGCGATGGGGATGGTTCCCCCTTCACGGATCAGGTCTGGCTCCACGTCAAACACTAGAGGAAAACAATGACAAGTCTGACTGcgtcataatgcattatacctgcaGTAGAGGAAAACCAACTGCAACCATTGGGATTAGAAGCCAGATCTCCTGCTCACCAAGTCAATATCTTAACCGTTAGACCAAGAGTACCTCTGCAAGGTccaagggtgtcatttgggaataCAAGCCTCAGACAGGGCTACCTCTTCGCGAGATTGTCATTCCAAGTCCTTTCTGCTacacaaaacat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146788 False 2558 TUCP 0.45 5 26857698 26861242
TU146789 True 1513 lncRNA 0.42 2 26857698 26859385

Neighbor

gene id symbol gene type direction distance location
LOC110485096 LOC106605526 coding upstream 34362 26813484 ~ 26823336 (+)
rwdd1 rwdd1 coding upstream 78219 26770464 ~ 26779479 (+)
LOC110485092 LOC106605522 coding upstream 91881 26746971 ~ 26765817 (+)
LOC110485091 LOC106605521 coding upstream 115918 26738924 ~ 26741780 (+)
trnar-acg-2 NA coding upstream 216459 26641167 ~ 26641239 (+)
LOC110485145 LOC106579269 coding downstream 38544 26897929 ~ 26903411 (+)
LOC110533712 NA coding downstream 45516 26904901 ~ 26909167 (+)
LOC110485187 LOC106605537 coding downstream 58010 26917395 ~ 26934478 (+)
LOC110485212 LOC106605536 coding downstream 288495 27147880 ~ 27175747 (+)
LOC110485224 rn146 coding downstream 319602 27178987 ~ 27182559 (+)
G127216 NA non-coding upstream 2569 26834107 ~ 26855129 (+)
G127211 NA non-coding upstream 27002 26830195 ~ 26830696 (+)
G127209 NA non-coding upstream 29247 26828248 ~ 26828451 (+)
G127202 NA non-coding upstream 31794 26825312 ~ 26825904 (+)
G127188 NA non-coding upstream 65407 26792028 ~ 26792291 (+)
G127200 NA non-coding downstream 1907 26861292 ~ 26863437 (+)
G127256 NA non-coding downstream 77033 26936418 ~ 26936967 (+)
G127376 NA non-coding downstream 80287 26939672 ~ 26939929 (+)
G127381 NA non-coding downstream 82771 26942156 ~ 26942373 (+)
G127390 NA non-coding downstream 88843 26948228 ~ 26948446 (+)
G127190 cf113 other upstream 61936 26794210 ~ 26795762 (+)
G126727 LOC106581475 other upstream 229049 26626849 ~ 26628649 (+)
G126387 LOC105417071 other upstream 807594 26049850 ~ 26050104 (+)
G125934 NA other upstream 1099845 25682880 ~ 25757853 (+)
LOC110534557 LOC106605501 other upstream 1475386 25377221 ~ 25396334 (+)
G127644 LOC106605534 other downstream 330606 27189991 ~ 27190593 (+)
LOC110485466 LOC106605529 other downstream 442693 27288172 ~ 27303644 (+)
G128185 NA other downstream 857097 27716482 ~ 27717163 (+)
G128436 NA other downstream 1229262 28088647 ~ 28089445 (+)

Expression


Co-expression Network