G127571


Basic Information

Item Value
gene id G127571
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27112208 ~ 27112513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU147200
aaaacagaatagagctaagcacaggcaaaatcctagaggaaaacctggtttagtctgctttccaccagacactgggagacaaattcaccattcagtaggataataacctaaaacaaggccaaatctacactgacaGTGAGTTTTCTtgtgtggccgagttacagttttgatttaaatgtacttgaaaatctatgttgagacctgaaaatggttgtctagcaatgaatTTTGAAAAACAATAATTGGCAAATgtttcacaatccaggtgtggaaagatcttagagacttacccagaaatactttttt

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147200 True 306 lncRNA 0.37 1 27112208 27112513

Neighbor

gene id symbol gene type direction distance location
LOC110485187 LOC106605537 coding upstream 177730 26917395 ~ 26934478 (+)
LOC110533712 NA coding upstream 203041 26904901 ~ 26909167 (+)
LOC110485145 LOC106579269 coding upstream 208797 26897929 ~ 26903411 (+)
LOC110485096 LOC106605526 coding upstream 288872 26813484 ~ 26823336 (+)
rwdd1 rwdd1 coding upstream 332729 26770464 ~ 26779479 (+)
LOC110485212 LOC106605536 coding downstream 35367 27147880 ~ 27175747 (+)
LOC110485224 rn146 coding downstream 66474 27178987 ~ 27182559 (+)
LOC110485466 LOC106605529 coding downstream 175659 27288172 ~ 27303644 (+)
LOC110485500 LOC106579140 coding downstream 209037 27321550 ~ 27331169 (+)
LOC110485507 LOC106579115 coding downstream 219184 27331697 ~ 27380409 (+)
G127517 NA non-coding upstream 57357 27054632 ~ 27054851 (+)
G127513 NA non-coding upstream 61539 27050337 ~ 27050669 (+)
G127503 NA non-coding upstream 67474 27044496 ~ 27044734 (+)
G127500 NA non-coding upstream 68528 27043450 ~ 27043680 (+)
G127482 NA non-coding upstream 70032 27036342 ~ 27042176 (+)
G127608 NA non-coding downstream 28700 27141213 ~ 27141510 (+)
G127702 ubr5 non-coding downstream 157620 27270133 ~ 27270723 (+)
G127709 NA non-coding downstream 168005 27280518 ~ 27280720 (+)
G127712 NA non-coding downstream 170877 27283390 ~ 27283688 (+)
G127697 LOC106605528 non-coding downstream 196015 27308528 ~ 27310040 (+)
G127198 LOC106605538 other upstream 250966 26857698 ~ 26861242 (+)
G127190 cf113 other upstream 316446 26794210 ~ 26795762 (+)
G126727 LOC106581475 other upstream 483559 26626849 ~ 26628649 (+)
G126387 LOC105417071 other upstream 1062104 26049850 ~ 26050104 (+)
G125934 NA other upstream 1354355 25682880 ~ 25757853 (+)
G127644 LOC106605534 other downstream 77478 27189991 ~ 27190593 (+)
G128185 NA other downstream 603969 27716482 ~ 27717163 (+)
G128436 NA other downstream 976134 28088647 ~ 28089445 (+)

Expression


Co-expression Network