G127905 (LOC106579140)


Basic Information

Item Value
gene id G127905
gene name LOC106579140
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27321474 ~ 27331163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU147558
TCATATTGACTGTTTTATCTATTCATAGCATATATAATGCTTACACATTCATATATCTCTTTTAACATCAAATATACACAACATGAGATAACACACAAATATAGCATCTTTGTAACACTATTTGATGCCAAGGTGAACCAATACCTCATGAACATGTACCAGATGTGCTTAGATGTGCAGGTAAAAGAacaaattggtcacatacacaagtATCTATGAATAGTACCACTCAAAGATGTAGCTATCAATATGCACAACACAGACGTGGAATGATTGAAAATGCATAAACTACCAGAAATAAATATTTAGAGATCTTATTCGTTTCAGCACAcagttaaaggcccaatgcagctgttttatctcaacatcaaatcatttctgggtaacaattaaatactgtgattgttttcaattaaaattttCAAAATGGTCAAAAAGTAACAAAAAATAGGATTTTAGCatgagcaatttctcaagcaagaatttgaCTAGGACTGTTTTTGGATTGGGGATGGAAAAATgtaaactagctgttattggcagaggtttggaacactTTCATATTGttctattaattaattaattagtcaCCAGTCAGCcgaaaactccatcccaccaaaacaggctgaaatttctaTCTTACACTAAAATGGCCTTATTCCACAATATcgttccaacctcagtgtggaaatctatataaaaacacaggaaaatcacatttttgactgcactgggcattTAAATACAGTGTActttgattatgctgtttaaaaaaaaatctgtaaacAAAACCAACAAAATTTACATCAAGCCATTGTTTGTCCTCAGTTTGTACAGATGGAGGGGGTCACTAAGTGCTTTAAACCACAAGGAATGAGCATGCACATCTGAGGAGAGCAAGGATAAACAGTATCACCCagacatgaggagaggagaggacgattagagaggagaggagatagcaGGGCAGAGAAAGGAGAAAAGAGCAAGACTGGGAGAAAGATTTACAGGAAAACACAAGTTAGTGGGTACTCAGCATAAAGACAAGACAGAACAGAGGGGTCAGGTACAGTGAAAATCTATTTAAAGTCCAGCAGGTTGCAGTCTATCTTGTAGTAAACATAAGGGTAGTACTCCTGCTGGCTCAGGTTCAGACCAGGGATATCCATGGCGGAATCAATGACAGCTGCAGCGCTGCTGTCCAGGTGTTTGTATAGGTCATTGAGAACCTCCCTCAGTTTCTTCATGTTCTTCTTGTTGGGCTGGAGCAGCATGGCCTGGAAGTTCACAGGCAGCCCATATCTTAAGACAGACTCCACAAAGACCCTCAGAGCCTTGATGTGAATCCATGCGATGAAGGCCTCACTGAAGTTCACTTTCAGCCATCGCACCAGTGGCCCAAACTGCTTCTTCTTGTCTGTGGAGAGACGTGTCATCTCCTCTTTGTCCGCATTCATCTCCTGCTCGTTGTACTGGAAGTCCCTGACTGTGTACttgTTCTCTCTGGCCTTGTGTCTGAAGTCATCAATGGCCTTCCTGAATAGGGTGACGCTGAACAGACCACTGTCATGGTCCTCAAACAGCAGGTTAGTGGATCGGGGTACCACCATTTCAGACAACGTTTCATAGGTCTTCTGCCAGTCAACATAACTCGTCTTTGGTACAACCACCAACATAGTGATCAGATACTCTGAGTCAATCACAAAGTCCTCCTTCTTGACAATGTCAGCCAGACTCCTGGTCAGCAGGCTCCCCGCATTCTTTCTCTCCAGATTCTGCAGGTTCCCTTTCAAGTTGTTGTAGGCAGACGCTCTGGCCTTCAGGTCGTTGTCAATCTGGCTTACTTGCTTGGATATGATATCAGAGATGTTCTTCAGTGACTGCTTGATGGGGTACTTGGCCATGTCCCACTGAAACCGTGTGATGTAGGTCACCAGATCCACTCCGTTGGCCAGCAGGTTCTCCTGGACTTTGTCTCGGCTGTCCTCCAACACATCAGCCATGTACTGAgacaccttcttcaccacaCCTTCGATAAAGGAGTCCAGtttggccaggtcatctgacagCCCAACTAACACATCTAGTGTCCCCACCTTGAGGTCTGGGATGTTGAACTTGTTGTTGGTGGACAGGTTGTTGTTGCGGGTGGTAGCCACCATCATCTGGTCCCATGTCTGCTGGCAGGTCTTCTCTCCAGGAGCTGAGATCAACCAGAACTCTGTCATGGCTATACACTGATGACTACAGGCTCAAAACGAAATGCACAGAGATGGGTGCTGAGATCTAATGACAAAACTATTCGAACACTAATCAATTACTACCGTACAATTCCTATGGTTCAATATTCATAATTGCCAATCAAATCGTAAGACTAAAGGTCTTTCCAGCAGCATCACATTCATGTCAGCTGATCAGATGAGGAACAGAAAGGCCTCTCGTGGGGGAGGGAAACTTTTTGACGTCACGATATTTGACAGACGACCCCAGCTGGTTTGGAGGAGGTACTACAGCC

Function

NR:

description
V-type proton ATPase subunit C 1-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147558 True 2515 lncRNA 0.50 13 27321474 27331163

Neighbor

gene id symbol gene type direction distance location
LOC110485483 LOC106605528 coding downstream 3755 27308514 ~ 27317719 (-)
LOC110485245 ubr5 coding downstream 43316 27231538 ~ 27278158 (-)
LOC110485403 NA coding downstream 90346 27215972 ~ 27231128 (-)
LOC110485460 LOC106605533 coding downstream 106072 27203190 ~ 27215402 (-)
LOC110485234 LOC106605534 coding downstream 119221 27184510 ~ 27202253 (-)
LOC110533720 LOC106605543 coding upstream 50178 27381341 ~ 27385479 (-)
LOC110485571 oxr1 coding upstream 88483 27419646 ~ 27633110 (-)
LOC110485644 LOC106579058 coding upstream 347145 27678308 ~ 27825113 (-)
LOC110534585 LOC106605382 coding upstream 596501 27927664 ~ 27931710 (-)
LOC110485663 LOC106579570 coding upstream 602226 27933389 ~ 28149986 (-)
G127945 NA non-coding downstream 28150 27290244 ~ 27293324 (-)
G127607 NA non-coding downstream 180754 27140502 ~ 27140720 (-)
G127596 NA non-coding downstream 190581 27130539 ~ 27130893 (-)
G127579 NA non-coding downstream 202801 27118446 ~ 27118673 (-)
G127991 NA non-coding upstream 36728 27367891 ~ 27369610 (-)
G128001 NA non-coding upstream 58425 27389588 ~ 27389825 (-)
G128003 NA non-coding upstream 59706 27390869 ~ 27392647 (-)
G128027 NA non-coding upstream 140835 27471998 ~ 27472270 (-)
G128046 NA non-coding upstream 170294 27501457 ~ 27501791 (-)
LOC110539285 LOC106579350 other downstream 658460 26641958 ~ 26675649 (-)
G127083 NA other downstream 759347 26561614 ~ 26562127 (-)
G125305 NA other downstream 2544847 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2786945 24531424 ~ 24540898 (-)
G129250 NA other upstream 434994 27766157 ~ 27766532 (-)
G129582 NA other upstream 979156 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1146023 28475823 ~ 28533709 (-)
LOC110486376 LOC106605451 other upstream 2537883 29859575 ~ 29878744 (-)

Expression


Co-expression Network