G129397


Basic Information

Item Value
gene id G129397
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27978482 ~ 27980086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU149169
GTTCAGTACACGTGAAGCAGGACTATCACTCTTAAGGCAAGACCAATATCAGCCCTTCCTTCCCATTCTATTCATAACATGGACATTAAGTAGACACTTTGTATACAAACTGACTTACGGCTAACACAGTAAAATGTTCAGTAAATGTGTCCCGTGCAGCAATCAAATCAAAGCCGAGCAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATAGAGGATGTTAACCGCATCATACATGCAGGATGTTAACCGCATCATACATAGAGGATGTTAACCGCATCATACATAGAGGATGTTAACCGCATCATACATAGAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACGGCATCATACATACAGGATGTTAACCGCATCATACATAGAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACAAACAGGATGTTAACCGCATCATACACACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACAAACAGGATGTTAACCGCATCATACACACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACAAACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACAAACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATAGAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACAAACAGGATGTTAACCGCATCATACATACAGGATGTTAACTGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACGGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACAAACAGGATGTTAACCGCATCATACATGCAGGATGTTAACCGCATCATACATACAATTTGGCAAGCTTCATGAACAAGTATACGTACTTACATGAGGTATTATATCAACCCTGTGAATCCATGGTATGTAGCGGTGACTGTGTCCTGAGTCACACAGACAGTAGTCAAGTGAAGTGTGTTTATAAAGAGACCCGAGCCAAGCCTTATAAGAGAAAGAATGTCCATCCTGTCCTGTCTTCCTTTTAAGTGTGTGGAATGATAACTACTGCCCTGGAATACACTAAGCATGCATTACACTTATAGTT
>TU149171
GTTCAGTACACGTGAAGCAGGACTATCACTCTTAAGGCAAGACCAATATCAGCCCTTCCTTCCCATTCTATTCATAACATGGACATTAAGTAGACACTTTGTATACAAACTGACTTACGGCTAACACAGTAAAATGTTCAGTAAATGTGTCCCGTGCAGCAATCAAATCAAAGCCGAGCAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATAGAGGATGTTAACCGCATCATACATGCAGGATGTTAACCGCATCATACATAGAGGATGTTAACCGCATCATACATAGAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACGGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATGCAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATAGAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACAAACAGGATGTTAACCGCATCATACATACAGGATGTTAACTGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACGGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACATACAGGATGTTAACCGCATCATACAAACAGGATGTTAACCGCATCATACATGCAGGATGTTAACCGCATCATACATACAATTTGGCAAGCTTCATGAACAAGTATACGTACTTACATGAGGTATTATATCAACCCTGTGAATCCATGGTATGTAGCGGTGACTGTGTCCTGAGTCACACAGACAGTAGTCAAGTGAAGTGTGTTTATAAAGAGACCCGAGCCAAGCCTTATAAGAGAAAGAATGTCCATCCTGTCCTGTCTTCCTTTTAAGTGTGTGGAATGATAACTACTGCCCTGGAATACACTAAGCATGCATTACACTTATAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149169 False 1405 lncRNA 0.40 2 27978482 27980086
TU149171 True 1080 lncRNA 0.41 2 27978482 27980086

Neighbor

gene id symbol gene type direction distance location
LOC110534585 LOC106605382 coding downstream 48666 27927664 ~ 27931710 (-)
LOC110485644 LOC106579058 coding downstream 153369 27678308 ~ 27825113 (-)
LOC110485571 oxr1 coding downstream 345372 27419646 ~ 27633110 (-)
LOC110533720 LOC106605543 coding downstream 593003 27381341 ~ 27385479 (-)
LOC110485483 LOC106605528 coding downstream 660763 27308514 ~ 27317719 (-)
LOC110485705 LOC106605396 coding upstream 172403 28152489 ~ 28164855 (-)
LOC110485712 LOC106605398 coding upstream 272539 28252625 ~ 28265466 (-)
LOC110485793 LOC106605408 coding upstream 337959 28318045 ~ 28329196 (-)
LOC110485762 LOC106605404 coding upstream 376313 28356399 ~ 28373544 (-)
g6f-like-a g6f-like-a coding upstream 397732 28377818 ~ 28401529 (-)
G129346 NA non-coding downstream 50985 27927271 ~ 27927497 (-)
G129371 NA non-coding downstream 54566 27923497 ~ 27923916 (-)
G129368 NA non-coding downstream 58725 27919493 ~ 27919757 (-)
G129360 NA non-coding downstream 72697 27902365 ~ 27905785 (-)
G129403 NA non-coding upstream 16038 27996124 ~ 27997088 (-)
G129434 NA non-coding upstream 65209 28045295 ~ 28045512 (-)
G129443 NA non-coding upstream 79556 28059642 ~ 28059858 (-)
G129444 NA non-coding upstream 79915 28060001 ~ 28060484 (-)
G129445 NA non-coding upstream 81859 28061945 ~ 28062221 (-)
G129250 NA other downstream 211950 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 700358 27231538 ~ 27278158 (-)
LOC110539285 LOC106579350 other downstream 1315468 26641958 ~ 26675649 (-)
G127083 NA other downstream 1416355 26561614 ~ 26562127 (-)
G125305 NA other downstream 3201855 24775220 ~ 24776627 (-)
LOC110485663 LOC106579570 other upstream 116596 27933389 ~ 28149986 (-)
G129582 NA other upstream 330233 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 497100 28475823 ~ 28533709 (-)
LOC110486376 LOC106605451 other upstream 1888960 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 2909607 30889693 ~ 30896340 (-)

Expression


Co-expression Network