G128423


Basic Information

Item Value
gene id G128423
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28073761 ~ 28074607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU148116
ACTCCCCGGAAGGAAGGCGACGTCTTCGCATAGCCTGCTGCGGATGGATCAATAAGCGAAGCCCCCTCTCTTCGAATGCTCCTTTGACATACCAACGGGGGAAGCCCATCATAAATCACACATTCTTACAAAGGAATCACTCACCCGATGTTGCTCAACGCCTGCTCGAATAGCTCCGTCTGCAGAATGTTCTGAGGCGGCGTAAAAGCCTCATTAAAATGGGATAGAACGGAGCTACAAAATTGACGCAATGTATCAAACTGCATTTTCCTCCTTTTTCCTTCGTGTCTTTTATCCTCAGTATGGCCCTTTTCCTCAAACACAATACATCCACCTGCGCTGCCTCGCTCTCCGTCCGGACCCGCGTCTGTTTATCTCCAGGGACGCATTAAACGCGAAAACGCCAATCAAGTTCCATATTTCTCCTGATCTTGGTAGAATGAGTCCTTAAATGAAAAGCAGTCGAGGCTGGAATGTACAGTCATAATGCTCCGAACTTAACCCGACAAAATATAGCGGGCAGTAGCAGGATCTATTTGCAGTGGAGGTGAGGGGGGAAAGCAGCAGCGAGGCATCTTCCAGCAAAGCAAGCTTCACTTACCGGTGCATCAGGGGCAGCTCATACTCAACTCATATTTCTCTCTGCCTATTAGAgcacgcatacaaacacacacatacatacacacacaacacgcaaGCATTCGTTCACGCACACGCTTGCcgtatccttctctttctcataCTCTGGACCGCGCACGCAGATACAATACATGGGCGCGCAGAGATGCTGTCGTCAGTGCTTTTGCCATATATGACTGCCAACCATCAGCTCTCATAAGTAATAAGG

Function

NR:

description
LOW QUALITY PROTEIN: regulating synaptic membrane exocytosis protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148116 True 847 lncRNA 0.49 1 28073761 28074607

Neighbor

gene id symbol gene type direction distance location
LOC110534576 dpys coding upstream 163775 27907789 ~ 27909986 (+)
LOC110485628 LOC106605483 coding upstream 395747 27651611 ~ 27678014 (+)
LOC110485563 LOC106579093 coding upstream 654596 27409765 ~ 27419165 (+)
LOC110485528 LOC106605545 coding upstream 664772 27403665 ~ 27408989 (+)
LOC110485543 LOC106579099 coding upstream 670336 27390590 ~ 27403425 (+)
LOC110485682 LOC106605395 coding downstream 90553 28165160 ~ 28171323 (+)
LOC110485672 LOC106605394 coding downstream 97239 28171846 ~ 28180205 (+)
ddr1 LOC106605397 coding downstream 119955 28194562 ~ 28250766 (+)
LOC110485735 LOC106605407 coding downstream 195644 28270251 ~ 28280280 (+)
LOC110485723 LOC106605400 coding downstream 206505 28281112 ~ 28296740 (+)
G128421 NA non-coding upstream 3719 28069796 ~ 28070042 (+)
G128415 NA non-coding upstream 17060 28056485 ~ 28056701 (+)
G128411 NA non-coding upstream 22023 28051445 ~ 28051738 (+)
G128368 NA non-coding upstream 50874 27991303 ~ 28022887 (+)
G128376 NA non-coding upstream 68418 28004863 ~ 28005343 (+)
G128431 LOC106605392 non-coding downstream 9561 28084168 ~ 28084780 (+)
G128438 NA non-coding downstream 17811 28092418 ~ 28092998 (+)
G128459 NA non-coding downstream 65671 28140278 ~ 28140905 (+)
G128474 NA non-coding downstream 106075 28180682 ~ 28181001 (+)
G128185 NA other upstream 356598 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 770206 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 883168 27189991 ~ 27190593 (+)
LOC110485212 LOC106605536 other upstream 913116 27147880 ~ 27175747 (+)
G127198 LOC106605538 other upstream 1212519 26857698 ~ 26861242 (+)
G128436 NA other downstream 14040 28088647 ~ 28089445 (+)
G128490 NA other downstream 176235 28250842 ~ 28547915 (+)
LOC110485990 LOC106579931 other downstream 857449 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 865292 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 1403010 29424822 ~ 29478401 (+)

Expression


Co-expression Network