G128431 (LOC106605392)


Basic Information

Item Value
gene id G128431
gene name LOC106605392
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28084168 ~ 28084780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU148126
atggtttcctagaaacaaggggtggctcaactaaccctttggctcaacttaccccactctcccctaacaGGTTTCACTTTTAACAGACAGTGTTCCTCCACAATAACGATCAAAAATGTTAAAACCAGCTCAAATCCCTGAGGGAATTGTTCAAATGTGTTTAACACACAcaacattccacacacacactggactcacctGTCTATGTCCTGTCCTTGACCTGAGTGCCTCAGCCCTGAGCCGTTGTTGAGGGAGCCTTGTCTGGGGAGCCCGGGAGGTCTGCTTCTATCTGCTGATATGTCCCCTGAGGGCCCCTGGTAGAGGAGATCCTGCTGCAGTTTGGCCTTCTTCTCCTGGGGAGCCTCCTCGTGACGTCGACCCCTGGGGCCCTCAGACCCGCCCCGTGGCCCTGCGGCGCTGCTGTAGAACCACGCTCCCGACTTGGTTAGGATTTCTTGTTGTTTTCGGCACAAGTTGCATACCCACATAACCTGTACATAGAGGACAGAGTGGGTTAGATATCTGCagtggtggggatggtggtggtggtggtgggcttACAGCAATGAACTACAATGAAAGGAGTCATGGAATGGATCAACCCCTAGAGGAG
>TU148124
CTATGTCCTGTCCTTGACCTGAGTGCCTCAGCCCTGAGCCGTTGTTGAGGGAGCCTTGTCTGGGGAGCCCGGGAGGTCTGCTTCTATCTGCTGATATGTCCCCTGAGGGCCCCTGGTAGAGGAGATCCTGCTGCAGTTTGGCCTTCTTCTCCTGGGGAGCCTCCTCGTGACGTCGACCCCTGGGGCCCTCAGACCCGCCCCGTGGCCCTGCGGCGCTGCTGTAGAACCACGCTCCCGACTTGGTTAGGATTTCTTGTTGTTTTCGGCACAAGTTGCATACCCACATA
>TU148127
CTATGTCCTGTCCTTGACCTGAGTGCCTCAGCCCTGAGCCGTTGTTGAGGGAGCCTTGTCTGGGGAGCCCGGGAGGTCTGCTTCTATCTGCTGATATGTCCCCTGAGGGCCCCTGGTAGAGGAGATCCTGCTGCAGTTTGGCCTTCTTCTCCTGGGGAGCCTCCTCGTGACGTCGACCCCTGGGGCCCTCAGACCCGCCCCGTGGCCCTGCGGCGCTGCTGTAGAACCACGCTCCCGACTTGGTTAGGATTTCTTGTTGTTTTCGGCACAAGTTGCATACCCACATAACCTGTACATAGAGGACAGAGTGGGTTAGATATCTGCagtggtggggatggtggtggtggtggtgggcttACAGCAATGAACTACAATGAAAGGAGTCATGGAATGGATCAACCCCTAGAGGAG

Function

NR:

description
PREDICTED: regulating synaptic membrane exocytosis protein 2-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148126 False 613 lncRNA 0.53 1 28084168 28084780
TU148124 False 287 lncRNA 0.60 1 28084370 28084656
TU148127 True 411 lncRNA 0.57 1 28084370 28084780

Neighbor

gene id symbol gene type direction distance location
LOC110534576 dpys coding upstream 174182 27907789 ~ 27909986 (+)
LOC110485628 LOC106605483 coding upstream 406154 27651611 ~ 27678014 (+)
LOC110485563 LOC106579093 coding upstream 665003 27409765 ~ 27419165 (+)
LOC110485528 LOC106605545 coding upstream 675179 27403665 ~ 27408989 (+)
LOC110485543 LOC106579099 coding upstream 680743 27390590 ~ 27403425 (+)
LOC110485682 LOC106605395 coding downstream 80380 28165160 ~ 28171323 (+)
LOC110485672 LOC106605394 coding downstream 87066 28171846 ~ 28180205 (+)
ddr1 LOC106605397 coding downstream 109782 28194562 ~ 28250766 (+)
LOC110485735 LOC106605407 coding downstream 185471 28270251 ~ 28280280 (+)
LOC110485723 LOC106605400 coding downstream 196332 28281112 ~ 28296740 (+)
G128423 NA non-coding upstream 9561 28073761 ~ 28074607 (+)
G128421 NA non-coding upstream 14126 28069796 ~ 28070042 (+)
G128415 NA non-coding upstream 27467 28056485 ~ 28056701 (+)
G128411 NA non-coding upstream 32430 28051445 ~ 28051738 (+)
G128368 NA non-coding upstream 61281 27991303 ~ 28022887 (+)
G128438 NA non-coding downstream 7638 28092418 ~ 28092998 (+)
G128459 NA non-coding downstream 55498 28140278 ~ 28140905 (+)
G128474 NA non-coding downstream 95902 28180682 ~ 28181001 (+)
G128185 NA other upstream 367005 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 780613 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 893575 27189991 ~ 27190593 (+)
LOC110485212 LOC106605536 other upstream 923523 27147880 ~ 27175747 (+)
G127198 LOC106605538 other upstream 1222926 26857698 ~ 26861242 (+)
G128436 NA other downstream 3867 28088647 ~ 28089445 (+)
G128490 NA other downstream 166062 28250842 ~ 28547915 (+)
LOC110485990 LOC106579931 other downstream 847276 28931988 ~ 28951235 (+)
G128853 LOC106605419 other downstream 855119 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 1392837 29424822 ~ 29478401 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G341145 NA non-coding NW_019172945.1 APWO02000037.1 2432458 ~ 2432875 (-)