G129572 (LOC106605400)


Basic Information

Item Value
gene id G129572
gene name LOC106605400
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28290531 ~ 28291251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU149352
atttgattataCAGAAACCCATCATCTCAGGACATGGCTTTAGTGTGTCTTGTCTTTTCAACAGTCTATGGTTGGGACATTAACACACAAACATAAAGGGATGAATTgggcagatggatggatggaggagaggaggaggagtgtgtgtatgtgtgtacctgtagtAGAGGTTGGGTGCTGGCGGTCCTCAGTGATTCCTCCAGACAGAAGCTGAACTTGTTCTCCTGCTCCCTATCCTTCACCAGGTACCTGTCAGTAGGTAGGAAATGACCCACCTTACCACaCTTATCCAGCCAATCGGTGGTGACGACGGGCATGCCGCGGGCCACAGCACACAGGAACTTGACGGTGCGTCGGACCCGGTCAGTCACCAGGTGGGTCATGTCAGCCACGCCCTTCGCCAGGCTGCCCCCCAGACAAGACACCACCTTCCCCCCCTCCTCATCCACCACTCCTGTAAACAAC

Function

NR:

description
mediator of DNA damage checkpoint protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149352 True 465 lncRNA 0.50 2 28290531 28291251

Neighbor

gene id symbol gene type direction distance location
LOC110485712 LOC106605398 coding downstream 25065 28252625 ~ 28265466 (-)
LOC110485705 LOC106605396 coding downstream 125676 28152489 ~ 28164855 (-)
LOC110485663 LOC106579570 coding downstream 140556 27933389 ~ 28149986 (-)
LOC110534585 LOC106605382 coding downstream 360715 27927664 ~ 27931710 (-)
LOC110485644 LOC106579058 coding downstream 465418 27678308 ~ 27825113 (-)
LOC110485793 LOC106605408 coding upstream 26794 28318045 ~ 28329196 (-)
LOC110485762 LOC106605404 coding upstream 65148 28356399 ~ 28373544 (-)
g6f-like-a g6f-like-a coding upstream 86567 28377818 ~ 28401529 (-)
LOC110485830 LOC106605406 coding upstream 178458 28468401 ~ 28471494 (-)
LOC110534614 LOC106605399 coding upstream 184572 28475823 ~ 28533709 (-)
G129547 NA non-coding downstream 58133 28230607 ~ 28232398 (-)
G129507 NA non-coding downstream 98988 28191336 ~ 28191543 (-)
G129459 LOC106605395 non-coding downstream 119214 28170013 ~ 28171317 (-)
G129464 znf384l non-coding downstream 122137 28167944 ~ 28168394 (-)
G129471 NA non-coding downstream 197173 28093153 ~ 28093358 (-)
G129582 NA non-coding upstream 19068 28310319 ~ 28310732 (-)
G129588 ino80e non-coding upstream 40444 28331695 ~ 28334476 (-)
G129631 LOC106605406 non-coding upstream 144715 28435966 ~ 28450726 (-)
G129250 NA other downstream 523999 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1012407 27231538 ~ 27278158 (-)
LOC110539285 LOC106579350 other downstream 1627517 26641958 ~ 26675649 (-)
G127083 NA other downstream 1728404 26561614 ~ 26562127 (-)
LOC110486376 LOC106605451 other upstream 1577795 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 2598442 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 2605775 30897026 ~ 30899564 (-)

Expression


Co-expression Network