G129588 (ino80e)


Basic Information

Item Value
gene id G129588
gene name ino80e
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28331695 ~ 28334476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU149370
TCCTGTAGCTGTCCATGCCATCAATACCATTTCTTCCATGACTTGTATTACAGTAGAAGGCAGTAAAATGACATTAAAGGAGCCAATTAGCAACATTATTATGACAGGTCACATTGTTTAGAGAGAGATATTGTTGCAGTAACCTGAAGGTCCAATGGGGTGAGCTTGGCTAAGCATTTGACAGTGGGAGGGGTTGaatccacacacactcacattgtgCTTTTACACACTCTTTCTAACaatcctaacacacacacacacacacacacacaccgtgacaatttccaaaacaaacacacacacattgtaggTACAAATACAGCCCCAAAAAATATAACATGAGAGACAACAAAAGATAAAcggaaaacataataaaacaatatTAATAATGCCCCAAATCAAAACAGTGATTATCTTCGGTAATGAGAAAACAATAATGGCAACAATCAATGATGTTATAGTTATTGATTGTATAGATTCAGTGAGAGGAAGGCGATTATAACTCACTGTGTTGAGGTAGGGGGTACTGCCGGACGACTGGAGAGGGTTCACTCcagaacgagagaggagagagagatgggaggatgaGGACGAGGGAAGGCCAACGCCAGGGCTACTCCTTCTCTTctttcctccgtctctctccctggtGCCCTCTCCTTCACTGTTCTCCGAAGAGGCTGTGGCATCAGAATCTGAGGAGTCCTCGTCTACCCTCTCGTATTGTAACAATCGGTCCAACAGAAAACTTTTATCTCGGGACACTTTGAGCAGCTTCCTCTGGGATCTTCTGAGCTCTTCCTGAAAACACTCCTGCTCATAAACCAGGAATTTCAATTTGCGTTTGAGATTTTTGTATTTCTGCTTGTAGTCCACCTCCATATCGGCTTGACCGTTCATTTCTGACGCTGTGGTTGAACCGTCAGTGGACGTGCTATACAGGTAGGGTAATCGTTAGTGTCGTGGTTATGTTAACTATAGCTAACAGCAGCTTGTTGGCTAGCTCACTGCTAGCCTTTCCAGTGCATTATCGTTGTTTTTTTAAGCATTTAGCTGGAAGCAGAAGACTAGCAATGGAAAATGCTTGAAAGTAGGATAATAAGGAGACGAAACCATGTAATTATGAAGTTAAATAGCTTGAATTAATATGAAAAATCATTCATACCTCTCGTTTGAATGAATATGTGCGACGTGCTCTTTGTTTACGTCTGTTCTTTTTCTTTAGGATTTGGTTGTCAGTTCGCGtataccgccacctactgtactggcaTGTGAGGCTATTCACGGCCTACCTACATTACATTATTGAGTCTActtccgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
ino80e Acts upstream of or within brain development. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in brain. Orthologous to human INO80E (INO80 complex subunit E).

NR:

description
PREDICTED: INO80 complex subunit E isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149370 True 1360 lncRNA 0.46 6 28331695 28334476

Neighbor

gene id symbol gene type direction distance location
LOC110485793 LOC106605408 coding downstream 2499 28318045 ~ 28329196 (-)
LOC110485712 LOC106605398 coding downstream 66229 28252625 ~ 28265466 (-)
LOC110485705 LOC106605396 coding downstream 166840 28152489 ~ 28164855 (-)
LOC110485663 LOC106579570 coding downstream 181720 27933389 ~ 28149986 (-)
LOC110534585 LOC106605382 coding downstream 401879 27927664 ~ 27931710 (-)
LOC110485762 LOC106605404 coding upstream 21923 28356399 ~ 28373544 (-)
g6f-like-a g6f-like-a coding upstream 43342 28377818 ~ 28401529 (-)
LOC110485830 LOC106605406 coding upstream 135233 28468401 ~ 28471494 (-)
LOC110534614 LOC106605399 coding upstream 141347 28475823 ~ 28533709 (-)
LOC110485869 LOC106605412 coding upstream 369207 28703683 ~ 28706157 (-)
G129582 NA non-coding downstream 20963 28310319 ~ 28310732 (-)
G129572 LOC106605400 non-coding downstream 40444 28290531 ~ 28291251 (-)
G129547 NA non-coding downstream 99297 28230607 ~ 28232398 (-)
G129507 NA non-coding downstream 140152 28191336 ~ 28191543 (-)
G129459 LOC106605395 non-coding downstream 160378 28170013 ~ 28171317 (-)
G129631 LOC106605406 non-coding upstream 101490 28435966 ~ 28450726 (-)
G129773 LOC106579830 non-coding upstream 341549 28676025 ~ 28677493 (-)
G129776 LOC106579830 non-coding upstream 349898 28684374 ~ 28687610 (-)
G129250 NA other downstream 565163 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1053571 27231538 ~ 27278158 (-)
LOC110539285 LOC106579350 other downstream 1668681 26641958 ~ 26675649 (-)
LOC110486376 LOC106605451 other upstream 1534570 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 2555217 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 2562550 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2857943 31192419 ~ 31196292 (-)

Expression


Co-expression Network