G129773 (LOC106579830)


Basic Information

Item Value
gene id G129773
gene name LOC106579830
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28676025 ~ 28677493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU149576
GAAACAGAGAAGATAGAAAACATAATATATTATAACAAGTATAACTTTTAGATAAAAACAAAATCATAGCAATATTAATGCTAGTCCATGTTATTAGGCGTGGAAGGCCATCAAATCAAACCCAGATTGTAGTTCTTACCTCCAGCTCAGTAGTATCTACTGCAGCCTTTTTGGAGAACTTGAGTAAATCCTTCAGCAGGAGCTGGTACTTCATGATGCGCTGCACAGGCTTAATGAGAAGATCAGTGATCTGGAGTCTGTGGCCCAGACGCTGCTTGAGCTCCTCAAAGTAAGTGTCTATGTACTCAGACACAATGTGCTCTGATTTGGGCTTGTTCTGACAGTACACGATGTACATGTGTAACCGGCGCTCTTGTTTGACGAACAGGGGAGCCAGCCTATCAGGATCCTCCAGGCACTTCTCTAGCTCTCCCAGGAAGAATTCTCTATGCCAGTCGTAGATCTGGTGGATATTCCCAAACACTATCTTGTCTTTTCCCCTCATGTCGTCTGGCACGCCGTCCTCCTTCATTTTGCTGATGTAGCCCTCCACCACTGAACCCAGGTCTCTCACG

Function

NR:

description
PREDICTED: triple functional domain protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149576 True 575 lncRNA 0.43 5 28676025 28677493

Neighbor

gene id symbol gene type direction distance location
LOC110534614 LOC106605399 coding downstream 142316 28475823 ~ 28533709 (-)
LOC110485830 LOC106605406 coding downstream 204531 28468401 ~ 28471494 (-)
g6f-like-a g6f-like-a coding downstream 274496 28377818 ~ 28401529 (-)
LOC110485762 LOC106605404 coding downstream 302481 28356399 ~ 28373544 (-)
LOC110485793 LOC106605408 coding downstream 346829 28318045 ~ 28329196 (-)
LOC110485869 LOC106605412 coding upstream 26190 28703683 ~ 28706157 (-)
LOC110485879 LOC106605413 coding upstream 29370 28706863 ~ 28714039 (-)
LOC110485888 LOC106579893 coding upstream 37899 28715392 ~ 28718511 (-)
LOC110485998 LOC106605419 coding upstream 300336 28977829 ~ 29007911 (-)
trnat-ugu-28 NA coding upstream 334227 29011720 ~ 29011792 (-)
G129631 LOC106605406 non-coding downstream 225299 28435966 ~ 28450726 (-)
G129588 ino80e non-coding downstream 341549 28331695 ~ 28334476 (-)
G129582 NA non-coding downstream 365293 28310319 ~ 28310732 (-)
G129776 LOC106579830 non-coding upstream 6881 28684374 ~ 28687610 (-)
G129777 NA non-coding upstream 11691 28689184 ~ 28689650 (-)
G129778 NA non-coding upstream 12285 28689778 ~ 28690079 (-)
G129784 NA non-coding upstream 18272 28695765 ~ 28696001 (-)
G129799 NA non-coding upstream 43714 28721207 ~ 28721896 (-)
LOC110485663 LOC106579570 other downstream 526039 27933389 ~ 28149986 (-)
G129250 NA other downstream 909493 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1397901 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 1191553 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 2212200 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 2219533 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2514926 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 2519580 31196917 ~ 31199241 (-)

Expression


Co-expression Network