G129776 (LOC106579830)


Basic Information

Item Value
gene id G129776
gene name LOC106579830
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28684374 ~ 28687610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU149581
ACGTTTAATGGCAAAATAACTGAGGACTAAATAAACTATTTATAGCAAGTAATGTGTAAACATAATTTCTGTACAAAGAAATATACATGCAAAAGTAAAAATAAGTCATTTAACATTCAAAATGACGTAGTATGTATCAAATATGATGAGGTTACATCCAGGTTCCCATGTTCGTCGTCCATGTCTGTACAGCTTTACACATGAATAAATAAGAGGACACAAAATGGGACTGTACAGGTTAACAAACACATTCATTGTATCACTGTGACTACTGCATTGACATGAAACTCTGATAACCTTTTCAAGCTTAAAAGGAAATACAGCTACTTCGTCCGCCTCTCCAGATGAATTTGACCGGCACATTAAAATCAGTTTGAACTCATACAATTATTAATTTACTGAAAGCAGCTAGGTCATGGTCACCCTCAGATAAAGGTTAGGGTAATAGTGCCGCAAAGCCCATGCACAATTATTGTAACGTTGGTACAATGTTGTGGGCAGTTTCTTCTTCAAACCAAAGGCCCGGCAAAGAATGCTACCCCAAGTTTATCTTCAGTTAAACCAAGATGTTGATCATTGCAACACAATGTCTAGCAAAATACATAACTTAAAAAGTCAAACAAACTTACACAGCAATCACCACTTTGTGCACAGCTTGAGAAGAGAAGTGTTTGAAATGTTAATTAGGTAAGCAGTAACAACCAACCACTAAACAACGTTCTTACAACGCTAATAAATAAAGCCACTGTGAACCAATGTAAACATCTCTAGGTTCAGCATGGTTTTCATAACTTAACATGGTACATTATAACACATTTAAAGAGAGTAAAGTACACTAAACTTTGGTATAGTTacagaaaataaaacaaatacaatgACAAACTGAAAGCATAAATGCCAATATAGATACAAATCTTTTTTCTTATTTTACATTATTTGCGAAACCTGCATTTTAGGTTTCCAAGATATTCATACTGAACTTAATACGGAAAAGAGTAACACAATACATACATCTACTGCAGTACCAGGTACGTACATGCCTTTTTAGATTACGGGTACAACACATGTCTTCACAAATAGTTGCATACATGTTAAAGCTGCAACATTGCACATGAGGAGTTAACGCAAAATATGAGTGCATTTATAGAAGTATTTCTGGTAGTGAGGGTTTAAGTAATTTGACTGGCATGAGGAGGAGCTAGTCTCCCTCACACCTCTCTTCCATTGGCAGGACTTACTACTCAGCTAATGAAACAGCGTTTGAGACAAATTCTTCAAAATGAGAATGAAGGCAGGAACACATTATTTACAAAGTAAGGCGGATGTATCAGAAATCTAAAGAGCTTTTCCAATAGTGTTATAgctttttgttgtttgtttgcttgtttaTTTCTCTGCTGAGGTCTGACTAAAATAGCATAATTGTACTAACTGTTACGGGTCCATACAATAGCAAGGCCAGAACAAAGCATACGCCTATTTATTGTAAGTTAATCAACTACAATGAGTTTGGTCTCCAACTGGTTCTAGAAGTAGTGTTCTGAAGCAACGACCCTGTGGTGGGTCGGTGGTGCTTTGTTCATATGTCGcattcatttttgttttcatgcttTTTATTAATAACCTTTGTTTTTGAAAAGGTATATGAATAAAGACATTTCTTTGTTTCTTCACTATACATTTTCTTTACAAAAAGTAATCTCTCATTACAAAAACAATTCTTATATTCAACCAAAAGTAACCCGATATTACAGTAATACTATCCAAACACAAGGCTTACTCTCACTGGCTCTCGAGAAAGCTTTGTTCTCCCTGTTAGTGAAGTTTTAAATACTTTCAAATAGTTCATACTTTTGTGCAGGCATATAGCCATCATCCATACAaaggtggggatggaagagaagTATCTAAATCTCTGGGGGAAAAAATCTCAGTCAAAAATATTCAAAGCAGTCAGCAGCAGCAGGATGCTGGGTAACATAGTTCTAAGGAAGTGGCGTAGTCGGCTGAGAGAGGATGAGATCATCATTGTGACTCGGTGGTTTCTGGGAACTGTAGTTCTCTAACCTGCTCATATCTGGTTGAGGAGTCTGCTGTGAAGGAAGGTCTTGATGCTGCCCACGGGCCTAACATCGTTCTGGTGTTTCCGCCGCTCGATGAAGGAGATGAGTCTGGAGGTGTCGATGCACCCTGGGTGCTGGTTTTGTTGCTGGTGGGAGTCCCACGGCTGCAGCCAGGACTCCTGAAGGCAAGCGGCGGCAGAAGGTCTCCGGTCCGGCTCGCCCTGTAGGAGGAGACCCACAAAGTCCCTGGCCGCCTGGCTCACACCCTGGAAGTAGTCATGGGGGAAGCTGAAGTCCAGACGACAGATGTTCAGGCATGTCTCCTCAGCGCTCTCGTCCAGGAAGGGAGATGCCCCGCTCAGTACCACGTATGTCACAACCCCCAGGCtccagaggtcagaggtcagggagaCGGGCTGGCCCAGCACCAGCTCCGGGGCTGAGAACTCTGGGCTGCCCAGTAGGGGGTGGATGTAGTGGCCACTGTTCAGCTGGACGGCGTCTCCGAAGTCTGTCAGCTTGACCACGGGCTGGGCAGAGTTCTGCTCCACTAACACGTTCTCAGGCTAAAGGGATACACACCGATACCTTCAAGTCCAAGTGAGCTATCCTCCAGCTATGCAGGTAGTGTAAAGCTTCTAGAATGTCCCTAAGGTACAAGGCCACCTTCTCTTCAGTGAGGTTACCCCAGCTGACTATGTAGTCCAGGAGACGGCCTTGATCAGCC
>TU149583
taatcgctgccaaatgtgattctaacatgtatagacacaggggtgtgaatacttaagtaaatgagatatttctgtatttcattttcaatacatttgaaaacatttctaaaaacatgttttaactttctaattatggggcattgtgtgtagatgagtgagagagaaaaaacatttaatccattttgaattcaggctgtaacaacatgtagaataagtcacgggctatgaatactttcttaaggcactgtacatacataaatATAAAACAAACTTCCAAGGGTATGTTCCATACGTTTAATGGCAAAATAACTGAGGACTAAATAAACTATTTATAGCAAGTAATGTGTAAACATAATTTCTGTACAAAGAAATATACATGCAAAAGTAAAAATAAGTCATTTAACATTCAAAATGACGTAGTATGTATCAAATATGATGAGGTTACATCCAGGTTCCCATGTTCGTCGTCCATGTCTGTACAGCTTTACACATGAATAAATAAGAGGACACAAAATGGGACTGTACAGGTTAACAAACACATTCATTGTATCACTGTGACTACTGCATTGACATGAAACTCTGATAACCTTTTCAAGCTTAAAAGGAAATACAGCTACTTCGTCCGCCTCTCCAGATGAATTTGACCGGCACATTAAAATCAGTTTGAACTCATACAATTATTAATTTACTGAAAGCAGCTAGGTCATGGTCACCCTCAGATAAAGGTTAGGGTAATAGTGCCGCAAAGCCCATGCACAATTATTGTAACGTTGGTACAATGTTGTGGGCAGTTTCTTCTTCAAACCAAAGGCCCGGCAAAGAATGCTACCCCAAGTTTATCTTCAGTTAAACCAAGATGTTGATCATTGCAACACAATGTCTAGCAAAATACATAACTTAAAAAGTCAAACAAACTTACACAGCAATCACCACTTTGTGCACAGCTTGAGAAGAGAAGTGTTTGAAATGTTAATTAGGTAAGCAGTAACAACCAACCACTAAACAACGTTCTTACAACGCTAATAAATAAAGCCACTGTGAACCAATGTAAACATCTCTAGGTTCAGCATGGTTTTCATAACTTAACATGGTACATTATAACACATTTAAAGAGAGTAAAGTACACTAAACTTTGGTATAGTTacagaaaataaaacaaatacaatgACAAACTGAAAGCATAAATGCCAATATAGATACAAATCTTTTTTCTTATTTTACATTATTTGCGAAACCTGCATTTTAGGTTTCCAAGATATTCATACTGAACTTAATACGGAAAAGAGTAACACAATACATACATCTACTGCAGTACCAGGTACGTACATGCCTTTTTAGATTACGGGTACAACACATGTCTTCACAAATAGTTGCATACATGTTAAAGCTGCAACATTGCACATGAGGAGTTAACGCAAAATATGAGTGCATTTATAGAAGTATTTCTGGTAGTGAGGGTTTAAGTAATTTGACTGGCATGAGGAGGAGCTAGTCTCCCTCACACCTCTCTTCCATTGGCAGGACTTACTACTCAGCTAATGAAACAGCGTTTGAGACAAATTCTTCAAAATGAGAATGAAGGCAGGAACACATTATTTACAAAGTAAGGCGGATGTATCAGAAATCTAAAGAGCTTTTCCAATAGTGTTATAgctttttgttgtttgtttgcttgtttaTTTCTCTGCTGAGGTCTGACTAAAATAGCATAATTGTACTAACTGTTACGGGTCCATACAATAGCAAGGCCAGAACAAAGCATACGCCTATTTATTGTAAGTTAATCAACTACAATGAGTTTGGTCTCCAACTGGTTCTAGAAGTAGTGTTCTGAAGCAACGACCCTGTGGTGGGTCGGTGGTGCTTTGTTCATATGTCGcattcatttttgttttcatgcttTTTATTAATAACCTTTGTTTTTGAAAAGGTATATGAATAAAGACATTTCTTTGTTTCTTCACTATACATTTTCTTTACAAAAAGTAATCTCTCATTACAAAAACAATTCTTATATTCAACCAAAAGTAACCCGATATTACAGTAATACTATCCAAACACAAGGCTTACTCTCACTGGCTCTCGAGAAAGCTTTGTTCTCCCTGTTAGTGAAGTTTTAAATACTTTCAAATAGTTCATACTTTTGTGCAGGCATATAGCCATCATCCATACAaaggtggggatggaagagaagTATCTAAATCTCTGGGGGAAAAAATCTCAGTCAAAAATATTCAAAGCAGTCAGCAGCAGCAGGATGCTGGGTAACATAGTTCTAAGGAAGTGGCGTAGTCGGCTGAGAGAGGATGAGATCATCATTGTGACTCGGTGGTTTCTGGGAACTGTAGTTCTCTAACCTGCTCATATCTGGTTGAGGAGTCTGCTGTGAAGGAAGGTCTTGATGCTGCCCACGGGCCTAACATCGTTCTGGTGTTTCCGCCGCTCGATGAAGGAGATGAGTCTGGAGGTGTCGATGCACCCTGGGTGCTGGTTTTGTTGCTGGTGGGAGTCCCACGGCTGCAGCCAGGACTCCTGAAGGCAAGCGGCGGCAGAAGGTCTCCGGTCCGGCTCGCCCTGTAGGAGGAGACCCACAAAGTCCCTGGCCGCCTGGCTCACACCCTGGAAGTAGTCATGGGGGAAGCTGAAGTCCAGACGACAGATGTTCAGGCATGTCTCCTCAGCGCTCTCGTCCAGGAAGGGAGATGCCCCGCTCAGTACCACGTATGTCACAACCCCCAGGCtccagaggtcagaggtcagggagaCGGGCTGGCCCAGCACCAGCTCCGGGGCTGAGAACTCTGGGCTGCCCAGTAGGGGGTGGATGTAGTGGCCACTGTTCAGCTGGACGGCGTCTCCGAAGTCTGTCAGCTTGACCACGGGCTGGGCAGAGTTCTGCTCCACTAACACGTTCTCAGGCTAAAGGGATACACACCGATACCTTCAAGTCCAAGTGAGCTATCCTCCAGCTATGCAGGTAGTGTAAAGCTTCTAGAATGTCCCTAAGGTACAAGGCCACCTTCTCTTCAGTGAGGTTACCCCAGCTGACTATGTAGTCCAGGAGACGGCCTTGATCAGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149581 False 2790 lncRNA 0.42 2 28684374 28687320
TU149583 True 3080 lncRNA 0.41 2 28684374 28687610

Neighbor

gene id symbol gene type direction distance location
LOC110534614 LOC106605399 coding downstream 150665 28475823 ~ 28533709 (-)
LOC110485830 LOC106605406 coding downstream 212880 28468401 ~ 28471494 (-)
g6f-like-a g6f-like-a coding downstream 282845 28377818 ~ 28401529 (-)
LOC110485762 LOC106605404 coding downstream 310830 28356399 ~ 28373544 (-)
LOC110485793 LOC106605408 coding downstream 355178 28318045 ~ 28329196 (-)
LOC110485869 LOC106605412 coding upstream 16073 28703683 ~ 28706157 (-)
LOC110485879 LOC106605413 coding upstream 19253 28706863 ~ 28714039 (-)
LOC110485888 LOC106579893 coding upstream 27782 28715392 ~ 28718511 (-)
LOC110485998 LOC106605419 coding upstream 290219 28977829 ~ 29007911 (-)
trnat-ugu-28 NA coding upstream 324110 29011720 ~ 29011792 (-)
G129773 LOC106579830 non-coding downstream 6881 28676025 ~ 28677493 (-)
G129631 LOC106605406 non-coding downstream 233648 28435966 ~ 28450726 (-)
G129588 ino80e non-coding downstream 349898 28331695 ~ 28334476 (-)
G129777 NA non-coding upstream 1574 28689184 ~ 28689650 (-)
G129778 NA non-coding upstream 2168 28689778 ~ 28690079 (-)
G129784 NA non-coding upstream 8155 28695765 ~ 28696001 (-)
G129799 NA non-coding upstream 33597 28721207 ~ 28721896 (-)
G129894 LOC106605415 non-coding upstream 167571 28855181 ~ 28860491 (-)
G129582 NA other downstream 373642 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 534388 27933389 ~ 28149986 (-)
G129250 NA other downstream 917842 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1406250 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 1181436 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 2202083 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 2209416 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2504809 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 2509463 31196917 ~ 31199241 (-)

Expression


Co-expression Network