G128760 (LOC106579893)


Basic Information

Item Value
gene id G128760
gene name LOC106579893
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28712992 ~ 28718735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU148482
TCCGTAACTTTTATTCATGGAAGTAGTCCTTGTGTGGGTTATGTCTGCAGTAGAAGAAGGAGTAGGCTGGTAACCGAAGTGTTGCCGGTTTGAATTTCAGGGCTGATGGGGAAATTTGGTGTGAGTGTGCCGGCAGCCACAGAGTTGCTGGCATCAGAACATCATGTGCAGCCtgctgccgttgtgcccttgagcaaggcacttcatcTTTTACATGATTTAGGGGCACTGCTTTGGGCTTTTTCCAGCCTCTTGTGCTTTATCTTACAATAGTTTGCTTCCATATTAGATGAGGTTTGACAATACGTGTTTCCTAGAAAGATTCGTTCAACAACGCATTTTCTGTGGTTTAACGAGAAGTGGCTGGCCATTTACTTTCCTTGACACTTGTGCTTTCTGAGTCTCACTTCCTTATTTCAGGTAAGCTATGTCAAGGCTATGTCCCTGTGTTGTTTAAGTTGTTTTGGTGTGAATTGATGTATCTCTGTGCATGTAGACCAAGCTGAATAAGTCAACATCGAGTAAAGGTACAGGTGGGAAATGTCACTGAACAAGATTGTCTAAATGCCCATTACATACAGAATATCTTATACCATGAGCAAACTATCAAGAGTGTGGTTTGAAATCAAAAAGAAAACATGTTATTGAAGACAATGTAAAAATGAAGGTAATCACAAATCCCAGACAgtcatgtatacagtatatatgtttcATGCCAAGTCCTATTGTGTTGTCTATTTACAAAACAGCAGTCTCAGCtttttttatttgtgttttttttaaacagacagcAGTGTTGTGACACTGTTAGCTTGTTAAAAAGCAAATGCCCCAGTCAGGTTTCTGTCACATTCTTAGAAGAAAAAAGCTATAACATACAAACTCAAAAATGAAGGAAAAAGGGTGAATCAATCTTTAAATTTTTCAGAAAATATAACTATATGtgcagtgtattcggaaagtattcagaccccttgaatttttccacattttttttttacattacagccttattctaaaagtgattcaatagttttccccctcatcaatctacacacaataaaagtaaaaactgttttttatagCAAAttgaaaaaaactaaaaactgaaatatcacatttacataagtattcagaccctttactcagtactttgttgaagcaccattggcatcaattacagccttgagtcttcttctgtatgacgctacaagcttggcacacctttatttggggagtttctcccattcttctctgcagatcctctcaaactctgtcaggttggataggagCATTGcacacaactattttcaggtctctccagagatgttagatcgggttcaagtccgggcgctggctgggtcactcagggacattcagagacttgtcccaaagccactccagcattttcttggctgtgtgcttagggttgttgtcctgttggaaggtgaaccttcacctcagtatgaggtcctgagcgctctggagacggttttcatcaaggatctctctgtactctgtcgatctttccctcgatcctgactagtctcccagtccctgccgctgaaaaacatccccacagcatgataccggcaccaccatgcttcaccatagggatggtgccaggtttcctccagacgtgacgcttggcattcaggccaaagagttcaatcttggtttcatcagaccagagaatcttgtttctcatggaccgagagtcctttaggtggcttttggaaaactccaagtggaaaactgtcatgtgcattttactgaggagtggcttccgtttggccactctactataaaggcctgattggtttagtgctgcagagatggttgtccttctggaagattcttccatctccacagaggaactctggagctctgtcagggtgaccatccggttcttgggcacttctctgaccaaggcccttctccctcaattgcgcagtttggccagacggccatctctaggaagagtcttggtgtttccaaagttcttcaatgatgcagaaatgttccagatctctgcctcgacacaatcctgtccgacctcatggcttggtttttgctctgacatgcactgtcaactgtgggatcttacatagacaggtttgtgcctttacaaatcatgtcgtatcaattgaatttaccacaggtggactccaatcaggttgtagaaacatctcaaggatgatcaatggaaacagaatgcacctgagctcaatttcaagtttcatagcaaagggtcagaatactaatgtaaataaggtatttctgtttttatttttaataaattagcaaaaatgtctaaagacctgttttcacttcgtcattattggatattgtgtgtagattgatgaggtgttGATGTTAAAAAcacttaatttaatacattttagaataagactgtaacgtaacaacatttgggaaaagggaaggggtctgaatactttccgaatgcactgtacatactgtcAATTTCTTTACTTTTTTTCGCACTTCACACAATACCACATGAGGACACAACTAACACTCTTTAAAGGTATCTATCAACAAAGGAATTGGAGCATGTAAAGATACAAAAGAGCAACtgatatctacagtatctaatgTAAGCATAGATTCACAGTTAGGGTGACTGAGTGCCACACTTTCAAAGAAATCCCCCTTTTCCTTACATCTTTTACTGTCTTTTCCCTTCTCAGAGTTTTATATTCGAAGTGTGCCTGCATACAAGTCAAACTACAGCAGTCTTGTAGATGATATTTCAGAAGACCTGGAATAGACTGAGATATTTCTTTCAGACAACCCACTAACATAAGGCCTGGCGAAGCACATTGGCATCCATTTTCTTAGTAACTTCAGGACAAGACTCATGAATTTCTGCCCTGCAAAGGCATAGATGATCGGATTCAAACAACAGTGTGTGAACGCTATCACCTCTGTCCACTGCATTGCCAGATCTATGTTCGTGTGAGTCGTACAGTCCCCAAAATAGCTCTGGGTCTCCAGATAACGCAGGAGAATGACCACATTGTATGGGGTCCAAAAGCAGAAAAAGACCACTACTATGATGATTATCAGTTTGATGGCTTTGTGCTTTTTGGTGGTTTTGATATTGACTAACATCGGAACGATTCTGGAATAGCAGATCACcatgacggagagagggagaagtagaccCAAGACATTCATCTCTAAATAAGAAACCTGGCGCCACATGCTACCGTCTGGATACTCTGGTTTACATGTTGTAAGCCCAGACTCATTATTTACTTTGGTGAAGATGATTGTAGGCAGAGAGGCACAGAGACTGAGAGCCCACATGAACAGAGACAGAGTGACCCCTACTCTGACTGATCTGGGCCTGGCCAGGGTGTGAGCGTGGACTATGACCACATAGCGATCCACTGTCAAGATCACCATGAAGAAGATGCTGCCATAAAACCCAAGCATGTATAGTCCGGTTACCAGTCGGCACATAAAGTCCCCCAGGAGCCACTTGGCTGCGGTGGCGTAGTGGGACCAGAAAGGCAGGGAGATGATGAAGAAAAGGTCAGACAGAGCCAGGTTGAAGAGACAGAGGTCTGTCATGCTTCTGATCCTCTTAAACACCACCAGGACACAGACCACCAGGCCGTTACCGATGAAGCCCACAATGAAGACCAGGCTGTAGAGTGTAGGCAGAAACACCCGTCCAAACTCCTTCACATTGGCATTGTTGCAGGGCTCTGAACTATATAAACCTTCTGTATCATCGTAGTAGGAGGAATagttatattctgttgttggctCCATATCCTTGTCAGGCATgattaatgatcaattagctctTTGGTGTTTCTTCTCTGAGTCTCTTGAAGATGTGTGTATTATCCTGTTGTACAATAGCCTATAGTACTGCTGCTGCAGTTTCCTTCACCTCCCTTAGAAGGAGGTACTGTGAACTTATTATAATGAATGTTGGTTTGTTTCACACTGCTATTTTTAGACTGAGGTTTGGGTGTACACtcttacaaaaaaaatgtgtgtgtgtaggggggggtgaatagttatacacagtcaagttcagtttttttgtcttatttcttgtcaAGAAATAGCGTAAATAACTATTCGCACCCCCAACGTCAGATCCACCTtgagctgcaagtctcttggtatgtctctataagct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148482 True 4183 lncRNA 0.47 2 28712992 28718735

Neighbor

gene id symbol gene type direction distance location
LOC110485836 LOC106605411 coding upstream 25662 28537533 ~ 28687330 (+)
si:ch73-22o12.1 LOC106605406 coding upstream 243244 28399615 ~ 28469748 (+)
vars1 LOC106605401 coding upstream 356750 28338839 ~ 28356242 (+)
LOC110485753 LOC106605405 coding upstream 374342 28335510 ~ 28338650 (+)
ino80e ino80e coding upstream 378378 28331733 ~ 28334614 (+)
LOC110485894 LOC106605414 coding downstream 1201 28719936 ~ 28780547 (+)
LOC110485935 LOC106605415 coding downstream 64839 28783574 ~ 28865311 (+)
LOC110485968 LOC106605416 coding downstream 148567 28867302 ~ 28905546 (+)
LOC110485980 LOC106605417 coding downstream 196086 28914821 ~ 28931101 (+)
LOC110485990 LOC106579931 coding downstream 213253 28931988 ~ 28951235 (+)
G128747 NA non-coding upstream 19025 28693692 ~ 28693967 (+)
G128746 NA non-coding upstream 19387 28693346 ~ 28693605 (+)
G128745 NA non-coding upstream 19746 28692952 ~ 28693246 (+)
G128741 LOC106584099 non-coding upstream 22593 28690095 ~ 28690399 (+)
G128640 NA non-coding upstream 23422 28688253 ~ 28689570 (+)
G128638 NA non-coding downstream 49484 28768219 ~ 28773582 (+)
G128813 NA non-coding downstream 132842 28851577 ~ 28851809 (+)
G129093 NA non-coding downstream 636737 29355472 ~ 29356526 (+)
G129099 NA non-coding downstream 648239 29366974 ~ 29367331 (+)
G128490 NA other upstream 165077 28250842 ~ 28547915 (+)
G128436 NA other upstream 623547 28088647 ~ 28089445 (+)
G128185 NA other upstream 995829 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 1409437 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 1522399 27189991 ~ 27190593 (+)
G128853 LOC106605419 other downstream 221164 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 758882 29424822 ~ 29478401 (+)
G129155 NA other downstream 765898 29484633 ~ 29485130 (+)
G130308 NA other downstream 881291 29600026 ~ 29641096 (+)

Expression


Co-expression Network