G128638


Basic Information

Item Value
gene id G128638
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28768219 ~ 28773582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU148354
ctgttcatcatatttgcatagtcactttaatgataccaacatgtacatactacctcaataagcctgactaacaggtatatagccttgctactctttttttcaaatgtctttttgctgttttttttctttacttacctacacacacatgcataccttTTTtccccgcaccattggttagaacctgtaaataagcatttctctgttgtattcgccgcatgtgacaaataaactttgattctGACATCCGGTGCATAAAACAACTCACGCTGGAACTCACAGGTGAAAAGGTTCAAACTGCAACGTTTTTCTAAAACAGGTGCCCCCAAATGCGGTAGTCCTGCCCTGGCCTGGAGTGTTTTGTGAAGCTCCATTTCTATCTTCCCTAGCTGGAGTCTGATGttatctctgctctgctctgtttgaTCTGCTCTGATCAGCAAGCAACACAATTGACACTGAGAGGCTTCCACTCAAGCGAGTAGCTTTACTGTACTTTCTCCACATACATTAAGCAGTTATAAGCAGCTTTCAGTTATTTGTTAATGTATCCATTCATTGATTGTCTTGTGTATTTTGCTTATTgtttaatgtaaaaaaataaaaaaataaacaaatttctTTCTGCACAGTATGATGAACAAAGACAATATAATTTAAGCTTATTGATTTCCCCCATTCTGCATCCTTCCTTTTCTTTAGGTGCTGAGTGTCCAGTGCCACTCAAACCTCTGCGAACCCCAGTACGGGAGCCCCCCCAGTTAGTCATCCCCCCACCCCCGCAGtaccctccccctccctcagaCCCAGACTCCCCCGATGCCTCACCAGAGAGCCACGGGGAGGAGGCCCCTCAGTGTAGGTCTCTCATCCCAGCTGACCTCCTCTACTGTTGGGCTGCCTTTCCCTCCGGCAGCCAGCCACTCTCCTTCCAACCTTCATGTCTTCCTCTAACTCCTCTCCTTTTTCAGTGCTGCTTCCGACCCTGAACTTCATAGTTGTTGTTGAATGTTGaatgtcctgtgtggctcagttggtagaccatggtgcttgcaatgACAAGGTTGTGGATTTGAGTCCCAGAGGGGACCAgtacaaaacatatatatatatgaaaatgtatgcactaagttgctctggatcagagcttctgctaaatgacaagAATGTTAAAATCAATCTGTGTGTATTTACAGATTTCCCTCTTAACGTGTAGTCCGGCTCATATGGACATTCTATCCAGGCTTGCCACGTCGTTCATCTCCTTTGCAGCCAGTTAAACAGTTACGAGGCCTCCTTTATAACAGACAGGCTGATAGGCAAGCTGAGCCCAATGCTGAAGGTCAGCTGTGACAGTGAAGTTCCTTGTatcccaaatgataccctattctctatataatgctcttcttttgaccagggcctatagggctctgttcaaaagtaatgcactatatagggaatagtgtgccatttaagACTCAACGTTAATCAACCTGTGAGGCTTTCATTGTATGTTTTTGTTAATCTCCTGCTGTCTGTAAAAGGCTGTGAGTTTCTGTTGTCAGGCTGCAATAGCTGCAACTTCTTTCTCCAGGGCTCCAGAACACTTATCTATCCTGTCCTATTTCTATCTCATGTCttcttcttttccctctctctgcctctcccctccACAGTCTACTGCTGTGCCCCTGTCCGTTTCCCGTTCTCCAAGCCTCGGTGAACAGACAGACCGACTTCTCTGGCCTGCCGTCCTCTCACTGTcttcctctaccacctcctctcctccctcgccTCTTCTGCACCTTCATCTCTTCCTGCTGGACCTCTGCTTCTTccatcctccttttcctgttctTAGAACTGCCCCTTGAACTTCCTTTCTTTCCCATCTCTACATTTTCAAATCCTCTCTTGTTGATGTCTTTTCTTTTCCTTGTTTTTGTGGCTTGTTTTTACAAAtgtctgtatatacagtatgaacTATAAGCCATTTTGTATTTCAGGTAGTTATACAGTGGTCTGTACGGTAGAGAACTAAGAGGAACGTGATGTGTGAGGGCTGATGGGGACAGGGATGTGTGTGATCAGTAGGCTGTTTAAGTGCAGATGAAATAGCCATACATGTACTGAGTGTGGAGTGATTGATGTAGACATTCTGAAATGAGGGTGTAAGGAAAGTCATACGATATCTCCAAATCAATGATTTGATGGTGGTGGTATAGGTTTCTATGTTATTTCTTAGTGTTTGTAGTGGTTAGTAACTAGAAACCAGGCTGTTGTTTCTCTGCATGCTGATTGATTGACTCCATTAAGGAGTGACCAATAAATCAATGACACTTTTTATGTGGAGGGTTCATCCTTTTTATGAGATTAGCTCCTTGGACATTGGTTAGTATTAGTGGGTTTGTGAGAAGCAGCTTCACTGCGACAACACATCAGTGGAGAGCTATATAGAAGTCACTCTTGTTTACACGTTTTTAGCTTTTACGTTGGACGTGTGAGGGAGTGAAATAAATAACTCCTCTGTATTGGCTTATCCAGATATTCAGCCCTCCTTTAAGTGCCTTTGTCAATAGCAGCATTCATGTGGGTTTTAATTGTGTTATATtgtacaaaaaaagtatttaaaagcATATTTATCATTACAAGTGCAAAATTAGCATGGCGTCCAAGACAGATCATTGAGATCAAGGATTTCCTTCAAATGGACAAGCAtgaaaatattaatattttatcatttcatttgaCATTAAAGACTTAAGACCATTTGTGTATTGAGGCCATGAGGAAATGATTTGTGATTGGGATTTTGGTCTGTGTGTGCTGGTAATGTTGCTTAGTGTGTTTCAGTATGTTGAGAATAGAGAGATGATAGATGTCTATGACtggatgtgtgtgagagagtgttactggcacagagagagagttactgCCTGAGAGTCTCTTGACTTGGTTTGTGCATGATTTGGGTTTATGTGATGGGAGCAAGGATGAGTTCATGTTTGTGTAAGAATTTGTTTTGGATGGCTAAGCCAGTGCTGGGAAAGGTTTGGGAGGGCCACTCTGTGTGAGTCACtggatctccaggaacaggctcTCTTCACCATTACAGCTCTGCCTGAAGTTGACAGGCCCAGCTCTCACACACTCATGGGTTGGGTGGCTTTAAAGCATCTCTCTAACAACTTCTCAGTGGTGTGCTCTGCATGCTGGCTGGATAATACTGTAAACCTAATAAATGGaacatacagttaaagtcggaagtttacatacatacacttaggttggagtcattaaaactcgtttttcaacaaccacaaatgtattgttcacaaactgtagttttggcaagtcgattaggacatctactttgtgcatgacagtaatttttccaacaattgtagacctccacaagtctggttcatccttgggatcaatttccaaatgcctgaaggtaccacgttcttctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagacacgttctcctagagatgaacgtactttgttgcgaaaagtgaaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacgggtacaaaagtatctatatccacagtaaaacgagtcctatatcgacataacttgaaaggccgctcagcgaggaagaccaccataaaaaagccgaactacggtttgcaactgcacatggggacaaagatcatactttttggagaaatgtcctctggtctgatcaataaaaaatagaactgtttgaccataatgaccatcattatgtttggaggaaaaagggggaggcttgcaagccgaagaacaccatcccaatcgtgaagcacgggggtggcagcatcatgttgtgggatgctttgctgcaggagggcctggtgcacttcacaaaatagatggcatcatgaggcaggaaaattatgtggacatattgaagcaacagctcaaaatatcagtcaggaagttaaagcttgttcgcatatgggtcttccaaatggacaatgaccccaagcatacgtccaaagttgtggcaaaatggcataaggacagcaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcctatagacaatttgtgggcagaactgaaaaagcatgtgcgaggaagaaggccttcaaacctgactcagttacgtcaggaggaatgggccagaattcacccaatttacccgaaacgtttgacccacgttaaacaatttaaggggaatgctcccaaatactaattgagtgtatgtaaactcctgatccactgggaatgcgatgaaagaaataaaagctgaaataaataattatcttctattattctgacatttcacattctgaaagaaagtggtgatcctaactgatctaagatagggaatgtttactaggattaaatgtcaggagttgtggaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtatgtattaatGCTCCTGCTTTTGGCTTGATGGGCAGTGAGTTAAGTGAGACATTATACAATCTAAATGTTTTGCTCCAAAGCCAAGTGGGAGACCATAGGACTACGGTATATAATGCAACAAGTCAATATCGTTCATGGGAAATACTGAGTACAGGATCATAAGGTATGTTTAAGCCTGCCCACATCAACGTAGCGGTTTCATTGagccacaagtgtgtgtgtgtttgtgtgtatctcAGAATGTATGTCTAGCTGACATTGTATAATATATTTTCTCTCAATCTtcccctctctgcttccctcctctctctgtcatgcACATGCTTGTACAACCTctctttttgttgttgctgtgaaCTGTTCTTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148354 True 4918 lncRNA 0.42 2 28768219 28773582

Neighbor

gene id symbol gene type direction distance location
LOC110485836 LOC106605411 coding upstream 80889 28537533 ~ 28687330 (+)
si:ch73-22o12.1 LOC106605406 coding upstream 298471 28399615 ~ 28469748 (+)
vars1 LOC106605401 coding upstream 411977 28338839 ~ 28356242 (+)
LOC110485753 LOC106605405 coding upstream 429569 28335510 ~ 28338650 (+)
ino80e ino80e coding upstream 433605 28331733 ~ 28334614 (+)
LOC110485935 LOC106605415 coding downstream 9992 28783574 ~ 28865311 (+)
LOC110485968 LOC106605416 coding downstream 93720 28867302 ~ 28905546 (+)
LOC110485980 LOC106605417 coding downstream 141239 28914821 ~ 28931101 (+)
LOC110485990 LOC106579931 coding downstream 158406 28931988 ~ 28951235 (+)
trnat-ugu-29 NA coding downstream 247837 29021419 ~ 29021491 (+)
G128760 LOC106579893 non-coding upstream 49484 28712992 ~ 28718735 (+)
G128747 NA non-coding upstream 74252 28693692 ~ 28693967 (+)
G128746 NA non-coding upstream 74614 28693346 ~ 28693605 (+)
G128745 NA non-coding upstream 74973 28692952 ~ 28693246 (+)
G128741 LOC106584099 non-coding upstream 77820 28690095 ~ 28690399 (+)
G128813 NA non-coding downstream 77995 28851577 ~ 28851809 (+)
G129093 NA non-coding downstream 581890 29355472 ~ 29356526 (+)
G129099 NA non-coding downstream 593392 29366974 ~ 29367331 (+)
G129149 NA non-coding downstream 699700 29473282 ~ 29473490 (+)
G128490 NA other upstream 220304 28250842 ~ 28547915 (+)
G128436 NA other upstream 678774 28088647 ~ 28089445 (+)
G128185 NA other upstream 1051056 27716482 ~ 27717163 (+)
LOC110485466 LOC106605529 other upstream 1464664 27288172 ~ 27303644 (+)
G127644 LOC106605534 other upstream 1577626 27189991 ~ 27190593 (+)
G128853 LOC106605419 other downstream 166317 28939899 ~ 28981288 (+)
LOC110534631 LOC106580029 other downstream 704035 29424822 ~ 29478401 (+)
G129155 NA other downstream 711051 29484633 ~ 29485130 (+)
G130308 NA other downstream 826444 29600026 ~ 29641096 (+)

Expression


Co-expression Network