G129882


Basic Information

Item Value
gene id G129882
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28904041 ~ 28936078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU149699
TcgcaaacacatttattttgttgTGTAAAGAGGACAGTACAATGATGCCACAAGGCAGATAAGTAGCAGGAAGCCACAAAGCATATAAAAGAATACAGCTATGCTTAAGGTTTTCCTCCTTCAAAAAACATAGGATTGCACTACCACCTTATCGCCAGGTAAGAGATGATCAAGTTAACAATACAATTTCCCCCCAGTGTGAGACTGAAGCAGTCAGCCCACTGCTGGTTATATCAAGTAAACACAGACACAAAAGAGACAAAAAGACACCACTACACatattctacacacacacacacccctccatccctcattcaAAAGGCACACTTGACTTGTGAATCAAACCAGGGACAGGGATATTTTATCTCTTGATTACTTAGTTCATTTATTTTGAGTGACTCCATGACATGCTGGGAATCACAGCTTAAAGGTCTAATCTAATTCAACTGGTTTGTTTATCCAACAGCCCAACAGAAACATCATATGATgtgcatacagtagagtacacaTTTGAAACACATTCATATTACCTTCTTAAGGAGAGACCCTCTCAAGTCAATTCCTCCTTGGCTCACTGCTACTGCTGAGGGCATTAAGTGAAGCTAGGTACATATTGTTTTTGTGTCTCTTCAAATCAACTGAGACATTAactgttgtctgtatattttattcaTGCAGGGCAAAAGCTTACAGTAAGTGTTTTAACTGATGCTCCCATAAGAGCTCTTATTTGTCTCATGGGTTATTATGCTGTTCAGGACAAAACTGCTTATGaaacagggttggggtcaattcctttTCTATTCAGTCGATTAGGGAGTTAAACATTTTTGCTCAATGTTTCTCTATGAGAACATTTTGGAATTAGAATTTTAGTTTACTTTcagaattgactgaattgaaacgGGAATGGCCACAACTCTGATATAAGCTACCTGTTTATCTGGTATAAGATACCTGTGTCTCTGGTATAAGATACCTGTGTCTCTGGTATAAGATACCTGTTTCTCTCTTTGGCAAAATCTCAACATGCTGTTAATTTTTTTGGCTTCATGAAAACAGTGAACAGCTCACACCTTGTGGGATACTAACTGTTTCTATCTCTACTTACTGTATAATGGTGCCAAACCATACAATGTTTTCTGACTCTTAAATGTTTTGAATTGTGAACATGTATAATGTGCAATCTTGTTTTAGGGACCTACACTATCCCAATGTTTTAATCAATATGCCCCTAAGGAGATAAATAATATTGTACTGAATTGAATACCTCTACTAATCA
>TU149700
GAAGAAGTCAGCCCAGTGCTGGTTATATCAAGTAAACACAGACACAAAAGAGACAAATAGAGACCACTACACatattctacacacacacacccctccatccctcattcaAAAGGCACACTTGACTTGTGAATCAAACCAGGGACAGGGATATTTTATCTCTTGATTACTTAGTTCATTTATTTTGAGTGACTCCATGACATGCTGGGAATCACAGCTTAAAGGTCTAATCTAATTCAACTGGTTTGTTTATCCAACAGCCCAACAGAAACATCATATGATgtgcatacagtagagtacacaTTTGAAACACATTCATATTACCTTCTTAAGGAGAGACCCTCTCAAGTCAATTCCTCCTTGGCTCACTGCTACTGCTGAGGGCATTAAGTGAAGCTAGGTACATATTGTTTTTGTGTCTCTTCAAATCAACTGAGACATTAactgttgtctgtatattttattcaTGCAGGGCAAAAGCTTACAGTAAGTGTTTTAACTGATGCTCCCATAAGAGCTCTTATTTGTCTCATGGGTTATTATGCTGTTCAGGACAAAACTGCTTATGaaacagggttggggtcaattcctttTCTATTCAGTCGATTAGGGAGTTAAACATTTTTGCTCAATGTTTCTCTATGAGAACATTTTGGAATTAGAATTTTAGTTTACTTTcagaattgactgaattgaaacgGGAATGGCCACAACTCTGATATAAGCTACCTGTTTATCTGGTATAAGATACatgtgtCTCTGGTATAAGATACCTGTTTCTCTCTTTGGCAAAATCTCAACATGCTGTTAATTTTTTTGGCTTCATGAAAACAGTGAACAGCTCACACCTTGTGGGATACTAACTGTTTCTATCTCTACTTACTGTATAATGGTGCCAAACCATACAATGTTTTCTGACTCTTAAATGTTTTGAATTGTGAACATGTATAATGTGCAATCTTGTTTTAGGGACCTACACTATCCCAATGTTTTAATCAATATGCCCCTAAGGAGATAAATAATATTGTACTGAATTGAATACCTCTACTAATCA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU149699 False 1282 lncRNA 0.37 2 28904041 28905542
TU149700 True 1052 lncRNA 0.37 4 28904041 28936078

Neighbor

gene id symbol gene type direction distance location
LOC110485888 LOC106579893 coding downstream 185530 28715392 ~ 28718511 (-)
LOC110485879 LOC106605413 coding downstream 190002 28706863 ~ 28714039 (-)
LOC110485869 LOC106605412 coding downstream 197884 28703683 ~ 28706157 (-)
LOC110534614 LOC106605399 coding downstream 370332 28475823 ~ 28533709 (-)
LOC110485830 LOC106605406 coding downstream 432547 28468401 ~ 28471494 (-)
LOC110485998 LOC106605419 coding upstream 41751 28977829 ~ 29007911 (-)
trnat-ugu-28 NA coding upstream 75642 29011720 ~ 29011792 (-)
LOC110486042 LOC106605424 coding upstream 151339 29087417 ~ 29090611 (-)
LOC110486122 LOC106605427 coding upstream 524866 29460944 ~ 29470038 (-)
hjv LOC106605430 coding upstream 542616 29478694 ~ 29489250 (-)
G129907 NA non-coding downstream 15385 28877390 ~ 28888656 (-)
G129904 LOC106605416 non-coding downstream 28823 28873492 ~ 28875218 (-)
G129896 NA non-coding downstream 38407 28860834 ~ 28865634 (-)
G129894 LOC106605415 non-coding downstream 43550 28855181 ~ 28860491 (-)
G129799 NA non-coding downstream 182145 28721207 ~ 28721896 (-)
G130025 NA non-coding upstream 181809 29117887 ~ 29185848 (-)
G130027 NA non-coding upstream 214225 29150303 ~ 29172644 (-)
G130028 stea4 non-coding upstream 224636 29160714 ~ 29196616 (-)
G130158 NA non-coding upstream 412130 29348208 ~ 29348648 (-)
G130174 NA non-coding upstream 437081 29373159 ~ 29373728 (-)
G129582 NA other downstream 593309 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 754055 27933389 ~ 28149986 (-)
G129250 NA other downstream 1137509 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1625917 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 932968 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 1953615 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 1960948 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2256341 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 2260995 31196917 ~ 31199241 (-)

Expression


Co-expression Network