G130027


Basic Information

Item Value
gene id G130027
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29150303 ~ 29172644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU149866
GTGGGGTAGGAGGCTGCTGCGGCTGTGGGGGCGTCGGCTGCCGAACACCACACCGTACCCCGCCTGCAGCAGACGCAGGCCCAGAGAGCGCCCCAGGTCCCCcgtcccaaacacacacaccctctcactcTCAGGTGGGGCAGGGACAGCCTCCATCATCGGAGACAGGGACACACACTCactcttctcctcactcctctcctgaCCCGTCATGCCTGAACAGAGACAGGCAAAGACCTCCTTGAGTCGTAGATAGAATCAACAGAAAGTGTCAAAAAGACCAAAGAGTTTAAAATACCTTCCTGAAGTTTCAATCACAGAAAAAGTATATTCACATAAATGGAGCTCGCAGGATGAACGTCCCTTTCACTTCGCGAAGTTCTATAGCAGACACCTCTAGACACGACTGACTGAATCTCTATTTGTGTCTGGGCGTGCtcctggagggaggaggaaagggagtAGTCTCTCTGCCAAGGTGGAAATTCCGTTGGAGGGGttttgcttgtttgtgtgtgtgtgtgtgtgtgggcaggaaAGCCCATGGcactaactctgtgttgtctctgaGGACAGGCCAGTGGTTTCTGGGAAGCAGGGATGTTACATAATAGTGGAATTCCAGACCTGGAAAGATGCCAGATCACTGTGGTCGTTCTGGGTTCACACAAGCACAGGTCCACAGTTCATGACAATAACACAACAGCTGATGCACTTTGGTTTGTTGTAATACTACCTTACCTCAGATGGCTTTTGTTCTAAGATGTGACAACATTCCATTGTGTGCAACAATAAGCTTGTAACTCCAAAAATCACAGAATGTGAAATACCAGAAGAACTGTGTCACATCACCATGAACAGTGTTTCCCAAATACAGCAGTTGGTGACCTTGAGCTCAAATGTTTCTTTAAACACTGGTTTCATCACAGCAAGAGCAATCTAAATGCTTGAGGTGGATCAGAGCAGAGAATGATTAGTGAACCCAAGCTTTAGACTGGGCCTAGTTTACAGTCACCCC
>TU149864
GTGGGGTAGGAGGCTGCTGCGGCTGTGGGGGCGTCGGCTGCCGAACACCACACCGTACCCCGCCTGCAGCAGACGCAGGCCCAGAGAGCGCCCCAGGTCCCCcgtcccaaacacacacaccctctcactcTCAGGTGGGGCAGGGACAGCCTCCATCATCGGAGACAGGGACACACACTCactcttctcctcactcctctcctgaCCCGTCATGCCTGAACAGAGACAGGCAAAGACCTCCTTGAGTCGTAGATAGAATCAACAGAAAGTGTCAAAAAGACCAAAGAGTTTAAAATACCTTCCTGAAGTTTCAATCACAGAAAAAGTATATTCACATAAATGGAGCTCGCAGGATGAACGTCCCTTTCACTTCGCTAAGTTCTTCAGCAGACACCTCTAGATGGAGTTACAGTACTGTCCAGACAGAGCACTGTCAATCAATGCTAGGACAGCTTACTGTAGTTGAAATCCTGCAATGAAATGTTTTCTGCATTACATGTCCCAAAACAATAGTATTCAGAGTTGGAGCAGATCCTCTGAGTTATCCAGATTAaagtcctgactgactgactgagatacTACAGACTG

Function

NR:

description
STEAP family member 4, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU149866 False 1018 lncRNA 0.49 2 29150303 29172644
TU149864 True 588 lncRNA 0.31 2 29150978 29172644

Neighbor

gene id symbol gene type direction distance location
LOC110486042 LOC106605424 coding downstream 59692 29087417 ~ 29090611 (-)
trnat-ugu-28 NA coding downstream 138511 29011720 ~ 29011792 (-)
LOC110485998 LOC106605419 coding downstream 142392 28977829 ~ 29007911 (-)
LOC110485888 LOC106579893 coding downstream 431792 28715392 ~ 28718511 (-)
LOC110485879 LOC106605413 coding downstream 436264 28706863 ~ 28714039 (-)
LOC110486122 LOC106605427 coding upstream 288300 29460944 ~ 29470038 (-)
hjv LOC106605430 coding upstream 306050 29478694 ~ 29489250 (-)
LOC110486192 LOC106605431 coding upstream 324223 29496867 ~ 29512154 (-)
mtx1a mtx1 coding upstream 350828 29523472 ~ 29540845 (-)
LOC110533728 LOC106605434 coding upstream 370405 29543049 ~ 29544879 (-)
G129882 NA non-coding downstream 214225 28904041 ~ 28936078 (-)
G129907 NA non-coding downstream 261647 28877390 ~ 28888656 (-)
G129904 LOC106605416 non-coding downstream 275085 28873492 ~ 28875218 (-)
G129896 NA non-coding downstream 284669 28860834 ~ 28865634 (-)
G129894 LOC106605415 non-coding downstream 289812 28855181 ~ 28860491 (-)
G130158 NA non-coding upstream 175564 29348208 ~ 29348648 (-)
G130174 NA non-coding upstream 200515 29373159 ~ 29373728 (-)
G130223 NA non-coding upstream 269999 29442643 ~ 29443224 (-)
G130239 NA non-coding upstream 298006 29470650 ~ 29470941 (-)
G130243 NA non-coding upstream 303784 29476428 ~ 29476800 (-)
LOC110534614 LOC106605399 other downstream 672472 28475823 ~ 28533709 (-)
G129582 NA other downstream 839571 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 1000317 27933389 ~ 28149986 (-)
G129250 NA other downstream 1383771 27766157 ~ 27766532 (-)
LOC110485245 ubr5 other downstream 1872179 27231538 ~ 27278158 (-)
LOC110486376 LOC106605451 other upstream 696402 29859575 ~ 29878744 (-)
c2h8orf37 cssa05h8orf37 other upstream 1717049 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 1724382 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 2019775 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 2024429 31196917 ~ 31199241 (-)

Expression


Co-expression Network