G130265


Basic Information

Item Value
gene id G130265
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29521303 ~ 29522801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU150130
ACCCATTTATTCAACCATGAAAATAAAACCCACATTAATATATTTACAGTTTGGTTTTTCAACTCCTATTCAAACTAGTAACATTTGTatgctatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagattttttttctccagaaagtcacattgtagattttttctgaatttatttgcaaattatggtggaaaataagtatttggtcaataacaaaagtttatctcaatactttgttatatacccttttatataccctttgttggcaatgacagaggtcaaacgttttctgtaagtcttcacaaggttttcatacactgttgctggtattttggcccattcctccatgcagatctcctctaaagcagtgatgttttggggctgttactgggcaacacggaccttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttacgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagtcacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcgtcctggtccctttgcagaaaaacagccccaacgcatgatgtttccacccccatgcttcacagtaggtatcgTGTTCTTTGGATggaactcagcattctttgtcctccaaacatgacgagttgagtttttaccaaaaagttatattttggtttcatctgaccatatgacattctcccaattttcttctggatcatccaaatgctctctagcaaacttcagacgggcctggacatgtactggcttaagcagggggacacgtctggcactgcaggatttgagtccctggcggcgtagtgtgttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggttcttgtgatcattttgaccccacggggtgaggtctcgcgtggagccccagatcgaggttagattatcagtggtcttgtatgtcttccatttcttaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgttactggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtaactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgctattaatacaggcaacgagtggaggacagagaagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttc
>TU150125
gtggaaaataagtatttggtcaataacaaaagtttatctcaatactttgttatatacccttttatataccctttgttggcaatgacagaggtcaaacgttttctgtaagtcttcacaaggttttcatacactgttgctggtattttggcccattcctccatgcagatctcctctaaagcagtgatgttttggggctgttactgggcaacacggaccttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttacgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagtcacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcgtcctggtccctttgcagaaaaacagccccaacgcatgatgtttccacccccatgcttcacagtaggtatcgTGTTCTTTGGATggaactcagcattctttgtcctccaaacatgacgagttgagtttttaccaaaaagttatattttggtttcatctgaccatatgacattctcccaattttcttctggatcatccaaatgctctctagcaaacttcagacgggcctggacatgtactggcttaagcagggggacacgtctggcactgcaggatttgagtccctggcggcgtagtgtgttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggttcttgtgatcattttgaccccacggggtgaggtctcgcgtggagccccagatcgaggttagattatcagtggtcttgtatgtcttccatttcttaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgttactggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtaactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgctattaatacaggcaacgagtggaggacagagaagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150130 False 1499 lncRNA 0.40 1 29521303 29522801
TU150125 True 1225 lncRNA 0.46 1 29521577 29522801

Neighbor

gene id symbol gene type direction distance location
LOC110534631 LOC106580029 coding upstream 42902 29424822 ~ 29478401 (+)
LOC110486083 LOC106605428 coding upstream 103006 29369835 ~ 29418297 (+)
LOC118937130 NA coding upstream 288582 29231578 ~ 29232721 (+)
LOC100136336 stea4 coding upstream 324663 29172098 ~ 29196640 (+)
LOC110486065 NA coding upstream 350184 29164798 ~ 29171119 (+)
LOC110486208 NA coding downstream 22443 29545045 ~ 29553946 (+)
LOC118944146 NA coding downstream 71363 29594164 ~ 29594216 (+)
LOC118936731 dcst2 coding downstream 132074 29654875 ~ 29662028 (+)
LOC110486269 LOC106580132 coding downstream 156406 29679207 ~ 29685150 (+)
LOC110486279 LOC106605442 coding downstream 163054 29685855 ~ 29697686 (+)
G129176 NA non-coding upstream 9170 29511836 ~ 29512133 (+)
G129165 NA non-coding upstream 23597 29495804 ~ 29497706 (+)
G129160 NA non-coding upstream 32062 29488953 ~ 29489241 (+)
G129157 NA non-coding upstream 34562 29486272 ~ 29486741 (+)
G129156 NA non-coding upstream 35211 29485766 ~ 29486092 (+)
G130290 NA non-coding downstream 23484 29546285 ~ 29546516 (+)
G130291 NA non-coding downstream 23858 29546659 ~ 29547042 (+)
G130282 NA non-coding downstream 31606 29554407 ~ 29554905 (+)
G130297 LOC106605438 non-coding downstream 54860 29577661 ~ 29581410 (+)
G129155 NA other upstream 36173 29484633 ~ 29485130 (+)
G128853 LOC106605419 other upstream 540015 28939899 ~ 28981288 (+)
LOC110485990 LOC106579931 other upstream 576913 28931988 ~ 28951235 (+)
G128490 NA other upstream 973388 28250842 ~ 28547915 (+)
G130308 NA other downstream 77225 29600026 ~ 29641096 (+)
G130414 NA other downstream 266775 29789576 ~ 29789831 (+)
G131491 NA other downstream 1177381 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 1225254 30748055 ~ 30749954 (+)

Expression


Co-expression Network