G130297 (LOC106605438)



Basic Information


Item Value
gene id G130297
gene name LOC106605438
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29577661 ~ 29581410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU150172
taggtaacagaatttattctcggagcgcgttaccacgagcaacagtttatatacaataacatgacgtcatttcattgcttctAAAATGAATCTCCTCCTCTAGACTGGGACAAAGggacacacaacacaactgaattaaCTTGACTCCtcaccattatcgatcaccacttagctgacagttctaattaacagaaaacctaggaatgcactcactgccttatcaaaaacaccccagagctcagttacgtcggttcaaccataggttatctaccttatctgtttacttaatccacaaaccattcctttcttcctagttggaatggtgttcattaacttgaattactccttgtccgtgtcacacaatcccttcttatgaactcatattgttaatcagatataataaaacagagtataagttttaGTTAGTTTCATTTAAAATAAGACtattgttcagtcatttaatcataattttccTAACAATATGACATTGTTTTAGCACTACCAGAGAAGAAGAGGTGAAGCGAGATGGTTCACTCCATTCAACATCTGTCCACGTGGGAACCACAAACCGCTTGCCTTTCCGCCTTTGGAACGACTCGCATTGTTAGGCAGAGACAAGACGATCTCATCATTATTTACAGTATCTCTGGCACTACCCATGGGTCGTGTTCGAGAAAATCAAAACTGCAAAGTATCATTGGTAAATTGTATaggactgatctacaaataatgagttgttatttatgatgcaatgtgatttgtagatcagtcagtcacccaAGTCACCCAAGTCATTTTTGATGCTCTCGAACATGGCCACAGAGTTGTTAACTACAGCACAAGACATCATtcaatctacagttgaagttggaagtttacatacaccatagccagatacatttaaactcagttttttcacaattcctgactttgaatcctagtaaaaaatccatgtcttaggtcagttaggatcaccactttattttaagaatgtgaaatgtcagaatgaaagtagagagagatttatttcagcttttatttatttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttaaattgtttcgggtagccttccacaagcttcccacaatcatttgggtgaatgttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcacacacactttttcagttctgcccacacattttctataggtttgaggtaaGGAccctgtgatggccactccaatgccttgactttgttgtccttaagtatgcttgaggtcattgtccatttgggagacccatttgcgaccaagctttaacttcctgactaatgtcttgagatgttgcttcaatatatccacatcattttcctacctcaagatgccatctattttgtgaagtgcacctgtccctccttcagcaaagcacccccacaacatgatgctgccacccccgtgcttcacggttgggatggtgttcttcggcttgcaagcctccccctttttcctccaaacataacaatgttggagcagtggcttcttccttgctgagcggcctttcaggttatgtcaatataggactcgttttactgtgaatatagatacttttgtacccgtttcctcgagcatcttcacaaggtcctttgctgttgttctgggattgatttgcacttctcgcaccaaagtacgttcatcactaggagacagaacgtgtctccttcctgagcggtatgacggctgcgtggtcccatggtgtttatacttgtgtcctattgtttgtacagatgagcgtggtaccttcaggcatttggaaattgctcctaaggatgaaccagacttgtggtctacagtctttccccccccccccccccatgatgccaagcacagagacactgagtttgaagTGATGGAGAGCTGAGAAATGAGGCATTTTTGGTAAGTACTTGGGGGCAGCATTCTTTATGCATGTCCACTATTATTTGGTGACAGCCAAGGGATGTGAAAGATTCAGAAATGTAATTTCTTCTTTTTATTATAGTAGGCGTAGTAAAAGAGAATGAACATTCCTACAGAAATAAAGACACTTGTTTTGTAGCCTATAGAAAAAGATGTCAGCTGAGGAAATGTAGGATTACAAAAATTGTATTCATTTGAAATGAATAGAAACGTGCATTATCTGTCTGTTTAAGTTGAAGACAAATAGGCTCCACGTGTAAATAAACCTACCCTTCACCCCCCCTCCCAAACACACTTTTTAATTTACTTATTTATAAATCTTCAACAAGCTTAAATCCACCTGATGTTATGTCATCAAATGCCTGTTGAAAAAAATTGACTCTCGATgaagatAGATATCTTCTGAGTCCATTCATTCTGCCTTCTTTATAGAGGGAGGTGAGACTTCCAGGGGGTCATTCTCTTCCTTGTATCCCCCCTCTGCAGTGTCCGATGGGCCCAATTTATATCTGCCCTGCAGGTGGCACCCATAGAGCCCTCCTAGCactagcacacaaacacacacagccaggagAAATGATACTGCCACCAATTCACTATGGTAATTCTTGGCTGTTAAGGGTTCATTGTGGTCTTCTGGTTTCTCACTGCTGGAAAGGGGGTCTGGGGTCATATCCTCTGGCTTCTCAGTACTGGAATTGGTGTTTGGAGTCTTGTCGGTTGTGGTTACGTCTGTGGTGATGACTGGATCCTCCCCAAAGTTAATGTGGTCTAGCTGGTCAGTGTCGCTTGGAATCTCCATCATAGTGGTCATCTGGTCTTTAGTCTCTGTGGTGGTGATCCGAAATTGAACGGCTGGAGTATCAATGGCCTGAGGAGAGAAACTCACAGTGTAGATAGCTGCTGTCTCCTCATAACCCCTCTCAACAGAGATGCAGTGGTAGATTCCGAAGGTGTCAGGTGTGGCCATGAAGACCAGATTCTCATCTCCAGAGTGAAAGAAGAGGTGGTGGGGCAGAGCGCTAGCTTTGGCGGACTTCCAACTCAGGGTTGCCAGATTGGAGGATCTGGAACACTTCAACCTCACTACTTCATTTAGCTGTGCGT

Function


NR:

description
semaphorin-4A-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU150172 True 3114 lncRNA 0.43 3 29577661 29581410
Loading

Neighbor


gene id symbol gene type direction distance location
LOC110486208 NA coding upstream 23715 29545045 ~ 29553946 (+)
LOC110534631 LOC106580029 coding upstream 99260 29424822 ~ 29478401 (+)
LOC110486083 LOC106605428 coding upstream 159364 29369835 ~ 29418297 (+)
LOC118937130 NA coding upstream 344940 29231578 ~ 29232721 (+)
LOC100136336 stea4 coding upstream 381021 29172098 ~ 29196640 (+)
LOC118944146 NA coding downstream 12754 29594164 ~ 29594216 (+)
LOC118936731 dcst2 coding downstream 73465 29654875 ~ 29662028 (+)
LOC110486269 LOC106580132 coding downstream 97797 29679207 ~ 29685150 (+)
LOC110486279 LOC106605442 coding downstream 104445 29685855 ~ 29697686 (+)
LOC110486333 LOC106605448 coding downstream 184272 29765682 ~ 29768627 (+)
G130282 NA non-coding upstream 22756 29554407 ~ 29554905 (+)
G130291 NA non-coding upstream 30619 29546659 ~ 29547042 (+)
G130290 NA non-coding upstream 31145 29546285 ~ 29546516 (+)
G130265 NA non-coding upstream 54860 29521303 ~ 29522801 (+)
G130345 LOC106581475 non-coding downstream 82600 29664010 ~ 29671945 (+)
G130335 LOC106580167 non-coding downstream 145141 29726551 ~ 29744867 (+)
G130410 NA non-coding downstream 203716 29785126 ~ 29785365 (+)
G130411 NA non-coding downstream 204294 29785704 ~ 29785943 (+)
G130424 NA non-coding downstream 218125 29799535 ~ 29799827 (+)
G129155 NA other upstream 92531 29484633 ~ 29485130 (+)
G128853 LOC106605419 other upstream 596373 28939899 ~ 28981288 (+)
LOC110485990 LOC106579931 other upstream 633271 28931988 ~ 28951235 (+)
G128490 NA other upstream 1029746 28250842 ~ 28547915 (+)
G130308 NA other downstream 18616 29600026 ~ 29641096 (+)
G130414 NA other downstream 208166 29789576 ~ 29789831 (+)
G131491 NA other downstream 1118772 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 1166645 30748055 ~ 30749954 (+)

Expression


G130297(LOC106605438) Expression in all Baseline Samples

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G130297(LOC106605438) Expression in each Bioproject

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G130297(LOC106605438) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network