G130345 (LOC106581475)


Basic Information

Item Value
gene id G130345
gene name LOC106581475
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29664010 ~ 29671945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU150228
ttgagcagacacatgcacatttgtggcctgctggaggtcattttgcagggctcttgcagtgctcctcctgctcctccttgcacaaaggcagaggtagcggtcctgctgctgggttgttgccctacggcctcctccacgtctcctcatgtactggcctgtctcctggtagcgcctccatgctctggacactacgctgacagacacagcaaaccttcttgccacagctcgcattgatgtgccatcctggatgagctgcactacctgagccacttgtgtggttgtagactccgtctcatgctaccacttgagtgaaagcaccgccagcattcaaaagtgaccaaaacatcagccaggaagcataggaactgagaagtggtctgtggtcaccacc

Function

NR:

description
PREDICTED: uncharacterized protein LOC109523355 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150228 True 391 lncRNA 0.55 2 29664010 29671945

Neighbor

gene id symbol gene type direction distance location
LOC118936731 dcst2 coding upstream 1982 29654875 ~ 29662028 (+)
LOC118944146 NA coding upstream 69794 29594164 ~ 29594216 (+)
LOC110486208 NA coding upstream 110064 29545045 ~ 29553946 (+)
LOC110534631 LOC106580029 coding upstream 185609 29424822 ~ 29478401 (+)
LOC110486083 LOC106605428 coding upstream 245713 29369835 ~ 29418297 (+)
LOC110486269 LOC106580132 coding downstream 7262 29679207 ~ 29685150 (+)
LOC110486279 LOC106605442 coding downstream 13910 29685855 ~ 29697686 (+)
LOC110486333 LOC106605448 coding downstream 93737 29765682 ~ 29768627 (+)
LOC110486369 LOC106605449 coding downstream 143835 29815780 ~ 29833805 (+)
LOC110486403 LOC106580236 coding downstream 228912 29900857 ~ 29914741 (+)
G130297 LOC106605438 non-coding upstream 82600 29577661 ~ 29581410 (+)
G130282 NA non-coding upstream 109105 29554407 ~ 29554905 (+)
G130291 NA non-coding upstream 116968 29546659 ~ 29547042 (+)
G130290 NA non-coding upstream 117494 29546285 ~ 29546516 (+)
G130335 LOC106580167 non-coding downstream 54606 29726551 ~ 29744867 (+)
G130410 NA non-coding downstream 113181 29785126 ~ 29785365 (+)
G130411 NA non-coding downstream 113759 29785704 ~ 29785943 (+)
G130424 NA non-coding downstream 127590 29799535 ~ 29799827 (+)
G130427 NA non-coding downstream 133229 29805174 ~ 29806131 (+)
G130308 NA other upstream 22914 29600026 ~ 29641096 (+)
G129155 NA other upstream 178880 29484633 ~ 29485130 (+)
G128853 LOC106605419 other upstream 682722 28939899 ~ 28981288 (+)
LOC110485990 LOC106579931 other upstream 719620 28931988 ~ 28951235 (+)
G130414 NA other downstream 117631 29789576 ~ 29789831 (+)
G131491 NA other downstream 1028237 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 1076110 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1619525 31262054 ~ 31294577 (+)

Expression


Co-expression Network