G130335 (LOC106580167)


Basic Information

Item Value
gene id G130335
gene name LOC106580167
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29726551 ~ 29744867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU150215
TTGCACGTTGAATGACTGTTAATGAAACCAACACACAAGTTAGCATCTGCGTAATATACTCAGCATATATTGGAAAATGAAAGTTTTAGACACCGTTCGCATTACTGGCAAGTATTTCTTTACATACTGTAGTTTAACTCCATGTTTATGGACAGAGGATACCTTGAAATAATCATTTGTACCAATCCACGATCAGTCATTATTACAGTTTGTTTTCATTACGTTTCATATTTTATTCCAAATTAGTTAACAAGGATATATCAACAAAGGAAATAGCTACACTGAAGGTCAAAGTTGGGGAGACGAGGTGAAGTAAGCCCCATTTATACCTTGTTCTAACTtgcgtcctttgtcctgatcttgtccacattctgattgtgcccacatttttagacaggtgtTAACAATCaaaagacacattgtgatctgattgtgatcttATTGTGTCTGGACATCTTACAAGTGTAGACAGATCTGGACAGAgaaaccatttaaatcatcattattCCGGCCTCTAAAATCAGTGACAGGTGGCTGATtacatcaatatgtgtcttacagtaaatatatatataaacattataGCTGTGACATTTTTTGCATAAAGGAAGGGACCAGGAACTCTGGTCACAATGCAGACACAGTGGACAGATAACAGACTCATTTTAATACCATGTGTAGACACACTTCtggaaatgtgggcacaatcagaatgtagaCTAGATCAGGACAAAAGTCCCacgttagcaccaggtataaatgGGGATATAGACAGTCAAAATGGTGGGGGTTCTAATTGCAGGAGTTTGCTGCCAAAAGAAAAACAAGGCAGCTCATGTGTATTGCAACACAACTTTCTGCCTTCCCCTTGCCTTGTCGACACAGAGCTGCAGTCTTACTTAAGTATTTTCACCTTGGTTTCACTGTGATTACTGTCCTCCCAGAGTTTCCCACAGTCAATGTTACAGACTGCACTGCAGTAAATGTTACACAGTGTGATGTAAAGCCATTGCTGCTTACAGCTCCCCATGTCTCCACTGAGTAGGCCTACagcacaggtgtcaaactcattccacggagggctgagtgtctgcgggttttcgcttcTCCCTTGTACTTCATTGAATTATGACTATGAATTAtagtcactaattagtaaggaactcctcaCAACTTGTTGTCTAGGgaaaaacaaaaacctgcagacaccaggtcctccatggaatgagtttgacaccccttgCCTACAGGGTACAATGATGACAGAGCATAACAGTCATACAGCCAAATCCTCACAGGGTGTGATAGGTGTTATGATGGGTTCACTAATCTGTCAAATACTGTGACATCTCTCATTATGAGGAATGAAGCATTAAAAGGAATTTGAGATATTAGTGATCCAAATAAAATGACAAAGAAAGAAGGTGCAAAGAAAGAGTTagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGTAAAGAAAGAGTTagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGTAAAGAAAGAGTTAGAAAGAGGAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGTAAAGAAAGAGTTAGAAAGAGGAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGTAAAGAAAGAGTTAGAAAGAGGAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGTaaagagagagctagaaagaggAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGTAAAGAAAGAGTTAGAAAGAGGAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGTAAAGAAAGAGTTAGAAAGAGGAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGTaaagagagagctagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTgagagagagagagaaagaaagaaagagagagcgagagagatggacagaagcACTCACTGACTGCCGGGGCGATTCCCCCCACACTGCCAGGCCCTGGGATGTTGCCTGCCACTGCTGCAGCCTGTGCTGCTGCTGCAGCCTGGGCCGTGGCTGCCTGCTGCTGCATCTGCCTGTGGCACTGACGCAGGTCAAACACCTTCATGTAGGCCCCAGGGTAGATCTTGTGAACTGCATCTCCCGGGGCTCGCCCCGCCTCCCGGTCCAGGTAGTAGCTCTGTACGAACACTGCATGGTCGCTAAGGCAACGCATCCACACATCCCCCTCACCACGACACTCTAACTGCACCCCCTTCCCAATGTGCAACCTGGGAAATGGAGATAGGAGTTCACACTGGTGAAGAGAAAATCACAGACACTGGGGATTGCATTTACTTCTATATAGGCGATAAAAACATATTTGCCCTGTGTATTCTGCAAACCAACAAGGTTCTCAAATAGCTAGCGGTTAGGCAAGGTTGGTATATTAGGGGCACGCTGATAGACCTGGCTCTCTCGCTAGCGTCGGTGCGGTGCACATTGCTGAGTTGGCCCAGACAGAAGCGGTCGCCCCCCGAGGGGTCCACATATCCGTCCACTGTCACCACGGGGCAGTTAGCCAGGACCTTGAACATCTCCCCAACCTGGATGTCCATCTCAAAGTAGGAGATGGAGCACCAGAACTCTGGACCTGG
>TU150216
TTGCACGTTGAATGACTGTTAATGAAACCAACACACAAGTTAGCATCTGCGTAATATACTCAGCATATATTGGAAAATGAAAGTTTTAGACACCGTTCGCATTACTGGCAAGTATTTCTTTACATACTGTAGTTTAACTCCATGTTTATGGACAGAGGATACCTTGAAATAATCATTTGTACCAATCCACGATCAGTCATTATTACAGTTTGTTTTCATTACGTTTCATATTTTATTCCAAATTAGTTAACAAGGATATATCAACAAAGGAAATAGCTACACTGAAGGTCAAAGTTGGGGAGACGAGGTGAAGTAAGCCCCATTTATACCTTGTTCTAACTtgcgtcctttgtcctgatcttgtccacattctgattgtgcccacatttttagacaggtgtTAACAATCaaaagacacattgtgatctgattgtgatcttATTGTGTCTGGACATCTTACAAGTGTAGACAGATCTGGACAGAgaaaccatttaaatcatcattattCCGGCCTCTAAAATCAGTGACAGGTGGCTGATtacatcaatatgtgtcttacagtaaatatatatataaacattataGCTGTGACATTTTTTGCATAAAGGAAGGGACCAGGAACTCTGGTCACAATGCAGACACAGTGGACAGATAACAGACTCATTTTAATACCATGTGTAGACACACTTCtggaaatgtgggcacaatcagaatgtagaCTAGATCAGGACAAAAGTCCCacgttagcaccaggtataaatgGGGATATAGACAGTCAAAATGGTGGGGGTTCTAATTGCAGGAGTTTGCTGCCAAAAGAAAAACAAGGCAGCTCATGTGTATTGCAACACAACTTTCTGCCTTCCCCTTGCCTTGTCGACACAGAGCTGCAGTCTTACTTAAGTATTTTCACCTTGGTTTCACTGTGATTACTGTCCTCCCAGAGTTTCCCACAGTCAATGTTACAGACTGCACTGCAGTAAATGTTACACAGTGTGATGTAAAGCCATTGCTGCTTACAGCTCCCCATGTCTCCACTGAGTAGGCCTACagcacaggtgtcaaactcattccacggagggctgagtgtctgcgggttttcgcttcTCCCTTGTACTTCATTGAATTATGACTATGAATTAtagtcactaattagtaaggaactcctcaCAACTTGTTGTCTAGGgaaaaacaaaaacctgcagacaccaggtcctccatggaatgagtttgacaccccttgCCTACAGGGTACAATGATGACAGAGCATAACAGTCATACAGCCAAATCCTCACAGGGTGTGATAGGTGTTATGATGGGTTCACTAATCTGTCAAATACTGTGACATCTCTCATTATGAGGAATGAAGCATTAAAAGGAATTTGAGATATTAGTGATCCAAATAAAATGACAAAGAAAGAAGGTGCAAAGAAAGAGTTagaaagaggagACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGtaaagagagagttagaaagaggAAACAGGGGAGAACGAAGGAGATTGAGGAAATAAGGGACTGTAAAGAAAGAGTTagaaagaggagacaggggagaacgAAGGAGATTGAGGAAATAAGGGACTGTAAAGAAAGAGTTagaaagaggagacaggggagaacgAAGGAGATTGGGGAAATAAGGGACTGTaaagagagagctagaaagaAAGAAGCGAAGGAGggtgaaagagagtgaaagagtgagagaaaaagaggaggaagagaggatggagctTAGTTAGTGACAGTGGAGGAGTGGGGTTTTGCCCACCTGTGTCTCTTCCTTCTGGTCAAAGCCAGAAGGACGAGGGGTAGCCAGAAGCTAGCAGTAGCCACCCCACTGCCATGTCCTGCTCTGAACCCCATCACCACTTACATTGTTCCAAACAGTGCACCTGGGCTCTGcagtctccacacacacacacacacagagtatcaCCAACAACATACAGGAGCTTCAACCTGTGAGTCTATTCACTATAGAAAATTGTTGCCTTCAAGATATAAAGTACCCTTCTTTTATACAATATATTCTCGAAATTAGCCAAACGAAAGAGAACAAAAATACACgaagggctcgattcaatccgtatcgctcAAGATCATCGCTATTCAAATGTGAAGGCAATATTCCAAGTTCGAGAAGACTgaattcacggtaaacgctgcatatgtcagctcaatAGACAATTACGTTACCATTTCAAGCGTTCTAGAGTGCAGAACTGGTGATTCGGATTGAATCGAGCCGTAAAAGATGAGCATGTCGGCATTGGCCAAAATAGTGGAACATACTGTATAAACCTTTTGGAAACCATACAGCAAAACATGACTCTTTACAACTCTTCGTGTCAAAACCATTTTTCACAATAatatcagtgactttcaaagaaCATCTTCTGGCACTACAAGCTGCTAACTAGCATGTGTTATTACCTGGTTATTACAGTACTAAGACTAACCTGCTGCAGTGATATTTCAGTAATTCGCTTATACTGTGGTGAATGCTTTTTCAATGCCACAGTATGAGAAGTTGTCATATTTCTTGTGATGACATGTATCCATGTAATAATGTTGTGGTTGTTTATTACATTCATATTTTCAGTCCGAATTAGTTCTAAAAATGGactcaaaataaatatttttgcaGTGAAATCACATTTGTCTTTACAACATTAATTGGTTTGAAACCTTGATGGTTTTAATTTTAGATACAGAGCTCGTCATCAAATATGGTAATGCCCCTAAACGGCAATAGTTAGGCCCCAAAACATTCAAGAATTTTTTCAACAAATATGTATTGGGAAGAAAATTCTAGCTGTCCTATTTGGTCCTACCTGTAGAGAAACTGCAACAGAGAGTCGGTTGCATGAGGTTTTCTCAttttaagagagagagaattaaaatCTCACTATCAATACAAGCAATACTTCTGTTTCCTtggtacatttgatttgatgatattTCTGTTTAATTCAGACATGCAATGAATTGAAGTACAATATTGGCAAGGGGAGGATTTTGAAGTCtgacaaaaatgttttttttgcatttgCATGTATCCTCCCGTCGCCTAAACTTCATACAACATGGTCAGACAATAATTCATAACAGCCTTGAATGTGTGATCATGGTCATATTCTGGTTAACAAACAACTTTTTCATTTTCATTACTCTTAACCTAATGCTGAGACTGAGTGTCTCTATAATTCTGTAGTGGTGTGGGTTATATATGTGTATGTTTATCTGTATGCATGTTTGTTACTTTGATTCGATCCTGTAGTTGAACCTTAACCACTGTAAAGTCCACTGTACAAGTCCCACCAGGAATGTTGTTCATTTTTTGTTGGTATTATTCACAAGATAAAGTATGGCATGAGGAAAAGCCACTCTCTCAGCAAGAAGTctatctcttcccctcctccacctccccctataCACACAAGTAGAACTATAATGCATTAGGCGGTGGGAGGAGCTAATATTCACTGAGGTTGTGCCACTTTGAGATCTGCCGACGGGGGTTTTCACAGACCTCCCGCCAGTGGGTGGCGCCAGAGGGACAGGGGCTGTGCAGGCCGAGGGGCAGACACCCCACCACCTCGTTCTTAGTGGTACGGTCAAAGTCGACCACCACAAACTCCACAGAGATCTCTGGGAGCAGCTCGGGGGGCACGTCGTAGATGAAGGACTCGTTGAAGACGGGGTTGAGCGTGCACCTCTTCACGTGCGTCTTTTTCTTGGCGATGCGCTTGCGTCCGTAGAACACATTGACTTTCACATAT

Function

NR:

description
synaptotagmin-11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150215 False 3354 lncRNA 0.45 2 29726551 29744867
TU150216 True 3817 lncRNA 0.40 2 29726551 29732509

Neighbor

gene id symbol gene type direction distance location
LOC110486279 LOC106605442 coding upstream 28865 29685855 ~ 29697686 (+)
LOC110486269 LOC106580132 coding upstream 41401 29679207 ~ 29685150 (+)
LOC118936731 dcst2 coding upstream 64523 29654875 ~ 29662028 (+)
LOC118944146 NA coding upstream 132335 29594164 ~ 29594216 (+)
LOC110486208 NA coding upstream 172605 29545045 ~ 29553946 (+)
LOC110486333 LOC106605448 coding downstream 20815 29765682 ~ 29768627 (+)
LOC110486369 LOC106605449 coding downstream 70913 29815780 ~ 29833805 (+)
LOC110486403 LOC106580236 coding downstream 155990 29900857 ~ 29914741 (+)
gnrh-r LOC106605452 coding downstream 180869 29925736 ~ 29930354 (+)
LOC110486448 cr3l4 coding downstream 333781 30078648 ~ 30083392 (+)
G130345 LOC106581475 non-coding upstream 54606 29664010 ~ 29671945 (+)
G130297 LOC106605438 non-coding upstream 145141 29577661 ~ 29581410 (+)
G130282 NA non-coding upstream 171646 29554407 ~ 29554905 (+)
G130291 NA non-coding upstream 179509 29546659 ~ 29547042 (+)
G130290 NA non-coding upstream 180035 29546285 ~ 29546516 (+)
G130410 NA non-coding downstream 40259 29785126 ~ 29785365 (+)
G130411 NA non-coding downstream 40837 29785704 ~ 29785943 (+)
G130424 NA non-coding downstream 54668 29799535 ~ 29799827 (+)
G130427 NA non-coding downstream 60307 29805174 ~ 29806131 (+)
G130419 NA non-coding downstream 95592 29840459 ~ 29840782 (+)
G130308 NA other upstream 85455 29600026 ~ 29641096 (+)
G129155 NA other upstream 241421 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 248421 29424822 ~ 29478401 (+)
G128853 LOC106605419 other upstream 745263 28939899 ~ 28981288 (+)
G130414 NA other downstream 44709 29789576 ~ 29789831 (+)
G131491 NA other downstream 955315 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 1003188 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1546603 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1615569 31360408 ~ 31366322 (+)

Expression


Co-expression Network