G130451


Basic Information

Item Value
gene id G130451
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29855976 ~ 29932819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU150349
AGTTGAAAACATCGCTTAAACTTTATTGACAGAATATGATGCAAGCCATTGGAGTCATATTGTGACAGTATTGCGTTGTGTTGTTGAGAGTATTCCATGCTCTGTTTGACACAACATCTAGTACTCCTTCATCTTTTAAAAGGGCTATTTGAAGACTTGCTTTATGACCATGGCTAGGTTAGCACATAGCTTATCCATTAGGACTGTATTTTAAACACACAGCGAGTAGTTCATCTCATGAGTCTCTTCCTTACTTATATGTGGACCATGCACTGCCTTTCCCTGGAAAATATATACTAggagaaaaaaaaagataatGAAATGTCCCATTCCAGCTGTCTGATCTACGCCAAGCCTTACAATAATTTTTACGAGGAGAAATTTTTAAAAGTGTACGATAATGAGAATAATATGAACTAATCGCTAACTGAACATCAATGCTGCTGAAAGTAAAGCATGTAATAACAGCGGAGCACTTCATACAATGTATAGACAAAGTGGTCCTGGGATAGATCAAACAACTCTTCATAAAAGATGATCCTACTGCCTCTAAGTACTAGAAAACAAGATATAGAAAGTTGAGAATGCTTTTGATAGTAAATAGAAAAACCCcacacatttttgcacatttgtgGCACAGGAATATACAGTGATCAATAAACAAAATGACAAGCTTCACAATATCCATGGCTTTTTGTTAGTTTTTCTATACAATGCATACCCACCTTGAATTCAATGTGTCTTATTCCACAAAGGAGGAACGCATATGTACAATAAATACGTCATTATTATAACTACAGCCGTTCAAGATAATATTACCTGACAATTTCTTAAGTTAATTAtatttcttgattttttttttcccccatttgTTTGTAAAAAATTGTTAGAAATTAAATTGAATAGACAGGTCAGCAAAATgtagttttttaaatgtttgaaaCCTTACAAAAATGACATCTGAAAATGCTAtttttcctgtgttttttttctttacgttctttaaaacaaaaatgttaaaATGGTGCATCTGGCATagtttgagaaagagagaaatattgATGATGAAGTAATTCCATAACGCATACATACAACAAAGAGGACAAAGATAACTATCAAAAACAGTGAGGCTGAAAATCACCCATGGGTCACTGTTGTCCATCCCAAACAGTGATCTAGCCGTGGGGTGTTCTGTGTTATTGGACTACGGCAAaccctgggtcgtgttcattcgGCACGAACAGTAGGAAAGGTTTTCAGACGGACAACAGAAATGAACGCCCCTATAGGACAAGTGCAGGTAGTACTACCTCTGTTTAAAATATTTGCTTCAGTTTGGTGCTTACTGAACACGGCCAATACAACATCTGTTCCATCTGGGTGCAACAAAAATAGTGCTTATACTACTGTATATGGGAGTAAGGCTACCTAACTAGTTGGGATACTAAATGGATAAAATAGTAACATTCAGCACAAATACTCAAATGAACTTTATCTTCCCTGTGTCTCAAAATATTGCACCTGCTTTTGAAGTTTATCAAAAAGGGCAAGGAGTAATCCACTGCTCTCTGGCAATatgtttattttacattttaaacTGCAGGGTATAAGAGGCAATAACCAGGCAACTCCTGCTTGCAAGAAGAAAATTAAATTGGAATTAATATTTCCTGCTGCTTTAAAATGGATGCACTAGTATTTGTTACTTCCAAATGTTATCCTGAAATAATTCAACATCAGGCATTGCTGAAATAGAGCCACAATTATCATGAGATGGAACAATAATCAATTCAATAATAATCAATCAATTCACCCTGGATTCCTGGTGGACAGAAACAATATCCCTACTCTCTGTACCTAAGTGCTCTGCATGTACAGTCCTGTGCATTGCCATAACccatcatgtacagtaccagtcaaaagttgacacacctactcattccagggtttttctttgattttactatattctacattgtataataatagtgaagacatcaaaactatgaaataacacatgtgaaatcatgtagtaaccagtgttaaacaaatcaaaatatattttatatttgagattcatcaaagtagccacccttcgccttgatgacagctttgctcacgcttggcattctctcaaccagcttcatgagttagtcacctggaatgcatttaaattaacaggtgtgccttgttaaaagttaatttgtggaatttctttccttcttaacgcgtttgagctaatcagttgtgttgtgacaaggtagggttgatATACTgaagatggtcttttaccaaaatggggttaagtccatattatggcaagtctagctcaaataagcaaagagacacggcagtctatcattactttaagacatgaaggtcagtcaatccagaacatttcaagaactttgaaagtttcttcaagtgcagtcacaaaaaccatcgagcgatatgatgaaattggctctcatgaggaccaccacaggaaaggaagacccagagttacctctgctgcagagaataagttcattagagttaccagcctcagattgcataccaaataaatacttcacagagttcaagtaacagacacatctcaacatcaactgttcagaggagactggtctgatgtgtccaaatttAAGACcaccaaccaccatgtctttgtgagacgcagagtgggtggacagatgatctctgcatgtgtggttcccactatgaagcatggaggaggtgatgtgatggtgtggggttgctttgctggtgacactgtcagtgatttatttagaattcaaggcacacttaaccaacatggctccCACAGCATtgtgcagcgatacaccatctcatctggtttgcgcttagtgggactcatttgtttttcaacaggacaatgacccaaaacacatctacaggctgtgtatgggctatttgaccaagaaagagagtgatggagtactgcatcagatgacctggcctccacaatcacccgacctaaacccaattgagatggtttgggatgagttggaccgcagattgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttcaagactgctggaaaagtatttcaggtgaagctggttgagagaatgctaaaaatgtgcaaagctgtcatcaaggcaaagagtggctactttgaagaatctcaaatatattttgatttgtttacaagaaaatagcaaaaataaagaaaaacccttgaatgagtaggtatgagTAGgtaactttgactggtactgtatatcctgTAAATATCTCTTTCTATAGAACTGTTTGATTTATGTCGATATTCAAGTTGCATTTGtcattctgtatttatttattgtctcCTGTTCAAAGTACCTTTCAGATACGCAAACACTTCAGAAGACACCAAACATCTAAATAGCTTAGAGCAGGCTAAATAGCTTAGAGCAGGTTTAaagctaatagctagctagccactctCCCTGACCGTTTTCAAATGCCTCCCAGACACCATGGGGATAATGTTGACACAAGAAAGTTCAAATAGTATCTAAACGGAATCCATAACTTTGAATGACAGGGTAGAGTGAACAATAGCAAATCCTATTAGCTAAGAGAtgaaaacaggggagagagggaacccCTGTGCCTCTTCCCCCCCATTCCCACTCCTAAATAAGTACAAACCATGGTCCTATGGGAAACGCCTTAGATTTTGAGTCTAAGGATGATCCCTCCCACCAAATCCAATACCTGTATCCTCTCCATTTAAATAAAAACTTATTCACCTGATCTCTCAGTACGTTCACATGAGCTCTCGTCCAATCAAATCCCTCTAAATGATCTCTCCAATCAATACCCCATCAATTTTATATGCTTTAGGATACTAACTCCTCAATTCAATCACTTCTGAACTACAGCCCCCAGGCTGCCTCAGATGAAAAGGTGAAAGGATACAGGGCAACTCTGCTATAGGTTCAGTTTCTGTGCCTTCATATCCAATGGGAGTAGTATTTTTTCAGCGGTGCATCCAATCCAAGTCCAGATGGTGCATTGGGCTGTCTCTCTTTGTGGGATATGTATCCATCCTTGTTTCAACAATCAGTTAGAAAAGCATTGCTTCAGACAACTCTGGGGTCTCAATCATCCTCTTTTCTCCCCACAAGTCTTTGAAGAAAGCTCAAGCTCAAAGGCTTGAGAGTATCAGGTCAAAGTTAAACCATCACAATCACCTTTTTAAAACAAAGGTTTGGCCGGTCTGGTAGAATTTCTCTTCCAATAATtcacaaccaaatgtggaaaaacagGGTGATGGTTGAATTCAGAAATCAGAGAAAGAGCAGGGATTTGAGAGTGGTGCAGTTCTCAAAAAGATAGCTTGGTAATTCCAGACATAACAAAGACTTGAGTTCGGTAAGGAAAGCTCAAGCGAGACAAAATATTGCTTCAAAAACAAGCACATAAATCCAAAACAAAAGACACCCCACACTCGGGACACTGCCACAAGCATATAAAGACAGGGGTTCTCCACAAAGATGGGCACGCTCATAACTGGTAGCGGCAATGTAGTAACAACATCCATAGCACTAATGACGATAGTAATAACAAGAGGAATTGAAAGGGGTTTGCATCACGTTCAAATGAAAAGTCATTTCAGAGTTTGGTGGCCTCTTTTGACTCGTTGATTGTGTTCTTCATACAGGTTAGTTTGGTAGGCACACTAACAGGCACTGCATGCGATGAGGGTTGAGGTGTGGTGTGGGGAAGGGTTGTGGTATTGCGTCGGGGCGGGGTGAGGTTCATTTCTGTCCACTGATGGACTGGGATATGGAGCGAGGCGGGATCATGTCCAGCAGGTATTCCCTCTGGCGGTCAGCCAGGCTGGACCCCTTGTGGCCGACCACATTGCCTGGGTTCAGGTAGGCAATGTTCAC
>TU150350
AGTTGAAAACATCGCTTAAACTTTATTGACAGAATATGATGCAAGCCATTGGAGTCATATTGTGACAGTATTGCGTTGTGTTGTTGAGAGTATTCCATGCTCTGTTTGACACAACATCTAGTACTCCTTCATCTTTTAAAAGGGCTATTTGAAGACTTGCTTTATGACCATGGCTAGGTTAGCACATAGCTTATCCATTAGGACTGTATTTTAAACACACAGCGAGTAGTTCATCTCATGAGTCTCTTCCTTACTTATATGTGGACCATGCACTGCCTTTCCCTGGAAAATATATACTAggagaaaaaaaaagataatGAAATGTCCCATTCCAGCTGTCTGATCTACGCCAAGCCTTACAATAATTTTTACGAGGAGAAATTTTTAAAAGTGTACGATAATGAGAATAATATGAACTAATCGCTAACTGAACATCAATGCTGCTGAAAGTAAAGCATGTAATAACAGCGGAGCACTTCATACAATGTATAGACAAAGTGGTCCTGGGATAGATCAAACAACTCTTCATAAAAGATGATCCTACTGCCTCTAAGTACTAGAAAACAAGATATAGAAAGTTGAGAATGCTTTTGATAGTAAATAGAAAAACCCcacacatttttgcacatttgtgGCACAGGAATATACAGTGATCAATAAACAAAATGACAAGCTTCACAATATCCATGGCTTTTTGTTAGTTTTTCTATACAATGCATACCCACCTTGAATTCAATGTGTCTTATTCCACAAAGGAGGAACGCATATGTACAATAAATACGTCATTATTATAACTACAGCCGTTCAAGATAATATTACCTGACAATTTCTTAAGTTAATTAtatttcttgattttttttttcccccatttgTTTGTAAAAAATTGTTAGAAATTAAATTGAATAGACAGGTCAGCAAAATgtagttttttaaatgtttgaaaCCTTACAAAAATGACATCTGAAAATGCTAtttttcctgtgttttttttctttacgttctttaaaacaaaaatgttaaaATGGTGCATCTGGCATagtttgagaaagagagaaatattgATGATGAAGTAATTCCATAACGCATACATACAACAAAGAGGACAAAGATAACTATCAAAAACAGTGAGGCTGAAAATCACCCATGGGTCACTGTTGTCCATCCCAAACAGTGATCTAGCCGTGGGGTGTTCTGTGTTATTGGACTACGGCAAaccctgggtcgtgttcattcgGCACGAACAGTAGGAAAGGTTTTCAGACGGACAACAGAAATGAACGCCCCTATAGGACAAGTGCAGGTAGTACTACCTCTGTTTAAAATATTTGCTTCAGTTTGGTGCTTACTGAACACGGCCAATACAACATCTGTTCCATCTGGGTGCAACAAAAATAGTGCTTATACTACTGTATATGGGAGTAAGGCTACCTAACTAGTTGGGATACTAAATGGATAAAATAGTAACATTCAGCACAAATACTCAAATGAACTTTATCTTCCCTGTGTCTCAAAATATTGCACCTGCTTTTGAAGTTTATCAAAAAGGGCAAGGAGTAATCCACTGCTCTCTGGCAATatgtttattttacattttaaacTGCAGGGTATAAGAGGCAATAACCAGGCAACTCCTGCTTGCAAGAAGAAAATTAAATTGGAATTAATATTTCCTGCTGCTTTAAAATGGATGCACTAGTATTTGTTACTTCCAAATGTTATCCTGAAATAATTCAACATCAGGCATTGCTGAAATAGAGCCACAATTATCATGAGATGGAACAATAATCAATTCAATAATAATCAATCAATTCACCCTGGATTCCTGGTGGACAGAAACAATATCCCTACTCTCTGTACCTAAGTGCTCTGCATGTACAGTCCTGTGCATTGCCATAACccatcatgtacagtaccagtcaaaagttgacacacctactcattccagggtttttctttgattttactatattctacattgtataataatagtgaagacatcaaaactatgaaataacacatgtgaaatcatgtagtaaccagtgttaaacaaatcaaaatatattttatatttgagattcatcaaagtagccacccttcgccttgatgacagctttgctcacgcttggcattctctcaaccagcttcatgagttagtcacctggaatgcatttaaattaacaggtgtgccttgttaaaagttaatttgtggaatttctttccttcttaacgcgtttgagctaatcagttgtgttgtgacaaggtagggttgatATACTgaagatggtcttttaccaaaatggggttaagtccatattatggcaagtctagctcaaataagcaaagagacacggcagtctatcattactttaagacatgaaggtcagtcaatccagaacatttcaagaactttgaaagtttcttcaagtgcagtcacaaaaaccatcgagcgatatgatgaaattggctctcatgaggaccaccacaggaaaggaagacccagagttacctctgctgcagagaataagttcattagagttaccagcctcagattgcataccaaataaatacttcacagagttcaagtaacagacacatctcaacatcaactgttcagaggagactggtctgatgtgtccaaatttAAGACcaccaaccaccatgtctttgtgagacgcagagtgggtggacagatgatctctgcatgtgtggttcccactatgaagcatggaggaggtgatgtgatggtgtggggttgctttgctggtgacactgtcagtgatttatttagaattcaaggcacacttaaccaacatggctccCACAGCATtgtgcagcgatacaccatctcatctggtttgcgcttagtgggactcatttgtttttcaacaggacaatgacccaaaacacatctacaggctgtgtatgggctatttgaccaagaaagagagtgatggaagacctggccgggtggtgccagaataacaaccaatCCCTCAACGTAACTAAgcctaaggagatgattgtggactacaggaaaaggagcatcgaccactgcctggtacagcaattgctcggcctccgaccgtaaggcactacagagggtagtgtgtacggcccagtacatcactggggcaaagctgcctgccatccaggacctctacaccaggcggtgtcagaggaaagcccgaaaaattgtcaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150349 False 4939 lncRNA 0.40 2 29855976 29860977
TU150350 True 3200 lncRNA 0.39 2 29855976 29932819

Neighbor

gene id symbol gene type direction distance location
LOC110486369 LOC106605449 coding upstream 22171 29815780 ~ 29833805 (+)
LOC110486333 LOC106605448 coding upstream 87349 29765682 ~ 29768627 (+)
LOC110486279 LOC106605442 coding upstream 158290 29685855 ~ 29697686 (+)
LOC110486269 LOC106580132 coding upstream 170826 29679207 ~ 29685150 (+)
LOC118936731 dcst2 coding upstream 193948 29654875 ~ 29662028 (+)
LOC110486448 cr3l4 coding downstream 145829 30078648 ~ 30083392 (+)
LOC110486462 NA coding downstream 164352 30097171 ~ 30103693 (+)
LOC110486473 LOC106605459 coding downstream 182716 30115535 ~ 30168611 (+)
gon4l LOC106605460 coding downstream 247166 30179985 ~ 30205554 (+)
LOC110534650 LOC106580339 coding downstream 272881 30205700 ~ 30209797 (+)
G130419 NA non-coding upstream 15194 29840459 ~ 29840782 (+)
G130427 NA non-coding upstream 49845 29805174 ~ 29806131 (+)
G130424 NA non-coding upstream 56149 29799535 ~ 29799827 (+)
G130411 NA non-coding upstream 70033 29785704 ~ 29785943 (+)
G130410 NA non-coding upstream 70611 29785126 ~ 29785365 (+)
G130773 NA non-coding downstream 61098 29993917 ~ 29994140 (+)
G130879 NA non-coding downstream 222477 30155296 ~ 30156840 (+)
G130906 NA non-coding downstream 296596 30229415 ~ 30229738 (+)
G130907 NA non-coding downstream 297619 30230438 ~ 30230681 (+)
G130414 NA other upstream 66145 29789576 ~ 29789831 (+)
G130308 NA other upstream 214880 29600026 ~ 29641096 (+)
G129155 NA other upstream 370846 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 377846 29424822 ~ 29478401 (+)
G131491 NA other downstream 767363 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 815236 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1358651 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1427617 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1924829 31834170 ~ 31887572 (+)

Expression


Co-expression Network