G130479 (LOC106605450)


Basic Information

Item Value
gene id G130479
gene name LOC106605450
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29892273 ~ 29900179 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU150380
GCCGCCTTCTGTGCCCGTGCTTGGCGCAGCATCTCCTGGTAGACTGGCATCAGGTGCGCTTGCAGGTTGGTGAGCATGGCGCTGGGATTCCGCAGGGCCTGGGCAGTGACCTCCACATGCCCACTCTCCACCGCCTCGTTGATAGCTATAACTGCAGCAtggaCAGCAGCCTCATCCACTGTTATCTCATTGGCTAAGATCCCCCCAATCTTGCTGAAGGCTGGCATCTGGATGCCATATTTGTCCAGCTCCCGTTTCATGTTGTTAATCTCCTCCTCTGTAAATTTGACCTTGCCACAGAGGTCATGGATCTGAGGGGCCAAACCTAGTCGGAAAAGGTAGAGGCTGAGAGCATGGATGCAGTACACAGTTCTGGGCATGTTCTTCTTATCATAGATGTCAGTGGTCTCTGGGTGGAACATCGTTGGTAGTCCGATCTCTGCCATCGCACTGCGCCAATGGTTGATGTTGTCCGTGTGGCGGAACTGCAATCCCATACCCTTGAAGCGTTCCTGGTCCAGGTCATAGATTTTTTTGAGGGGGATTATCTTGGGGGCAAAACAGTGGCCTAGCTTGGCCAGCAGCACCCCGTTCCTCAGCCCCTCCTCCAGTTCAGTCGGGGCAGGCAGCTCCTCGTGGAGACAAGCTTCCATCCACCTTTTAGCCTCTTCCAAACGGCACAGGTATTGATAGGCAACATTCTGGACGCGTTGTTCATCCATCT

Function

NR:

description
ras GTPase-activating-like protein IQGAP3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150380 True 724 lncRNA 0.54 6 29892273 29900179

Neighbor

gene id symbol gene type direction distance location
LOC110486369 LOC106605449 coding upstream 58468 29815780 ~ 29833805 (+)
LOC110486333 LOC106605448 coding upstream 123646 29765682 ~ 29768627 (+)
LOC110486279 LOC106605442 coding upstream 194587 29685855 ~ 29697686 (+)
LOC110486269 LOC106580132 coding upstream 207123 29679207 ~ 29685150 (+)
LOC118936731 dcst2 coding upstream 230245 29654875 ~ 29662028 (+)
LOC110486403 LOC106580236 coding downstream 678 29900857 ~ 29914741 (+)
gnrh-r LOC106605452 coding downstream 25557 29925736 ~ 29930354 (+)
LOC110486448 cr3l4 coding downstream 178469 30078648 ~ 30083392 (+)
LOC110486462 NA coding downstream 196992 30097171 ~ 30103693 (+)
LOC110486473 LOC106605459 coding downstream 215356 30115535 ~ 30168611 (+)
G130468 NA non-coding upstream 755 29880312 ~ 29891518 (+)
G130419 NA non-coding upstream 51491 29840459 ~ 29840782 (+)
G130427 NA non-coding upstream 86142 29805174 ~ 29806131 (+)
G130424 NA non-coding upstream 92446 29799535 ~ 29799827 (+)
G130411 NA non-coding upstream 106330 29785704 ~ 29785943 (+)
G130773 NA non-coding downstream 93738 29993917 ~ 29994140 (+)
G130879 NA non-coding downstream 255117 30155296 ~ 30156840 (+)
LOC110534650 LOC106580339 non-coding downstream 305879 30205700 ~ 30209797 (+)
G130906 NA non-coding downstream 329236 30229415 ~ 30229738 (+)
G130414 NA other upstream 102442 29789576 ~ 29789831 (+)
G130308 NA other upstream 251177 29600026 ~ 29641096 (+)
G129155 NA other upstream 407143 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 414143 29424822 ~ 29478401 (+)
G131491 NA other downstream 800003 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 847876 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1391291 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1460257 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1957469 31834170 ~ 31887572 (+)

Expression


Co-expression Network