G130879


Basic Information

Item Value
gene id G130879
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30155296 ~ 30156840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU150806
ttaggttggagtaattaaaactcgttttccaaccactccacaaatgtcttgttaacaaactagttttggctagtcggttaggacatcaactttgtgcatgacacaagtaatttttccaacaattgattacagacagattatttcacttataattcactgtgtcacaattccagtgggtcagaagtttacatgcattaagttaactgtgcctttaaacagcttggaaaattccagaaaattatgtcatggctttagaagcttctgatagtcaattggaggtgtacctgtggatgtatttcaaggtctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaataaatcaaccaagacctcagaaaaatatttgtagacctccacaagtctgattcatccttgggagcaatttccaaatgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggactacgcagccgtcaaaccactcaggaaggagatgcgttctgtctcctagagatgaacgtactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagaggctggaggaaacaggtacaaaagtatctatatccacagtaaaacaaatcctatatcgacataacctgaaaggccactcagcaaggaagaagccactgctccaaaaccaccataaagccagactatggtttgcaactgcacatggggacaaggttgtactatttggagaaatgtcctctggtctgacgaaacaaaaatagaactgtttggccataatgaccatcgttaagtttggaggaaaatgggggaggcttgcaagccgaagaacaccatcccaaccgtgaagcacgggggtgatagcatcatgggtctggtgcacttcacaaaatagatggcatcatgaggtaggacaattatgtggatatattgaagcaacatctcattacataagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatgaacaatgaccccaagcatacttccaaagtagtggcaaaatggcttaagggcaaaaaagtcatggtattggagtggccatcacaacgccctgacctcctatagaaaatgtgtgggtagaactaAAAAagtttgtgcgagcaaggaggcttacaaacctgactctgtcaggacgaatgggtcaaaattcacccaacttattgtgggaagcttgtggaaggctacctgaaatgtttgacccaagttaaacaatttaaaggcaatactaccaaatactaattgagtgtatgtaaacttctgacccactgggattgtgatgaaagaaattaaagctgtaataaatcattctctcaactattattctgacatttcacattcttaaaataaagtgaagaTCCTAACTGACattagacagggaattttttttttttactaggattaaatgtcaggaattgtgaaaaaattagtttaaatgtatttggct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150806 True 1520 lncRNA 0.46 2 30155296 30156840

Neighbor

gene id symbol gene type direction distance location
LOC110486462 NA coding upstream 51603 30097171 ~ 30103693 (+)
LOC110486448 cr3l4 coding upstream 71904 30078648 ~ 30083392 (+)
gnrh-r LOC106605452 coding upstream 224942 29925736 ~ 29930354 (+)
LOC110486403 LOC106580236 coding upstream 240555 29900857 ~ 29914741 (+)
LOC110486369 LOC106605449 coding upstream 321491 29815780 ~ 29833805 (+)
gon4l LOC106605460 coding downstream 23145 30179985 ~ 30205554 (+)
LOC110534650 LOC106580339 coding downstream 48860 30205700 ~ 30209797 (+)
LOC110486492 LOC100194668 coding downstream 53643 30210483 ~ 30214827 (+)
LOC118944173 NA coding downstream 57438 30214278 ~ 30214413 (+)
LOC110486525 LOC106605463 coding downstream 77680 30234520 ~ 30249314 (+)
G130773 NA non-coding upstream 161156 29993917 ~ 29994140 (+)
G130451 NA non-coding upstream 222477 29855976 ~ 29932819 (+)
G130479 LOC106605450 non-coding upstream 255117 29892273 ~ 29900179 (+)
G130468 NA non-coding upstream 263778 29880312 ~ 29891518 (+)
G130906 NA non-coding downstream 72575 30229415 ~ 30229738 (+)
G130907 NA non-coding downstream 73598 30230438 ~ 30230681 (+)
G130921 NA non-coding downstream 97643 30254483 ~ 30254722 (+)
G130793 NA non-coding downstream 156407 30313247 ~ 30313950 (+)
G130414 NA other upstream 365465 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 461445 29685855 ~ 29697686 (+)
G130308 NA other upstream 514200 29600026 ~ 29641096 (+)
G129155 NA other upstream 670166 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 677166 29424822 ~ 29478401 (+)
G131491 NA other downstream 543342 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 591215 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1134630 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1203596 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 1700808 31834170 ~ 31887572 (+)

Expression


Co-expression Network