G131083 (LOC100194668)


Basic Information

Item Value
gene id G131083
gene name LOC100194668
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30212012 ~ 30214826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU151025
GCATTCGATTTGAATTTTATAGCAAATCAAACATACATGGCTACTGTGATGCTTGATTATCGACACACATACTTGGTTGAGAACAGACAATCCAGGCCAAACATTTAGTATTTTTGCAAAATAGCATCCCAAAAGAGAACAGTAGGCTGTACTATGTACACTAGCGGTCTGTTGGCCCACTGGTCTACCAACCCATTTCTTTCCTCATTTATCTTCATTctgctccctgtcctcctccagcCTGGTCATCGCCTTTCTTCTTGATTCCAGACACAATGTCATCAATGCGGAGCAGCAAGATGGCCGTCTGAAAGTACCTGGCTCTCGCCCTTCTTGTACTCCAGGGAGCAGTCCAGCAGGATGATGCGGGGGTTCTTGATCATTCTGCGCATGCGGGGGTGAGTGACGTCCTTGTTGACCATCACGCCTTTTAGCACACATGAGTCCTCAATGAAGCCACCAGGCACCTTCTCCACTTTGGCGTACAGCTTAATGTTGATCTCCTTGCGCCCGTGCTCCTCCAACTCCACAGTGCGCACGGCATCCAGGGCAATATTACACGCCATGGTAGACCAACGGCTCAAGGCCTTGGTGCAGATGGCAGAGTTGATGATCTTCAGCATCTGCGCCCTGTCATTCACATCCACCGGGGTGCTGGGAGGGAACAGAGACAGTCGGTCAATAGAATGGAGTGTAAAAGTGTGCGAGGGAGGATTGTGTGTGTAAGTGAATGCAATCTATACCTGATGTCTTTGAGCATCTCAAGCATGTCGTCAAGGGCGTGTCTGTAGGCACTGATGATGACTGTGGGGTGCATCTGCTGCTCCAGGAACTGCTCTGCTACAGACAGCATCTCCCCAGCTAGAGACCGACAAAATATTGAAAAAATATGTTAACCAAGAGCTGTTTTAAAAATGTGCACACTCAGTACGATGGCTTAGAGGACGATTGATTCTTACGCATCATCAACGTGGCCCTCTCGGAGTCGGAGT
>TU151026
TAACATATTCTTGTGCATGAGGGGTAACTTGATACGTACAGCCAGGATCTCTTTGCTGGCTCCTCTCAGCAGGATGGTGCAGGCTTTGGGGTCTTTGCACTCTGTGACAAAGGTGAAGTACTCATCTCCAATCTTCTTGATCTCAAACAGGCCGGCGCCGGTTCCCACGTCCTCCTCACGCAGCTCATCTGTACGGCTGGCGATGCGAGCCCCACATGCCCTTGAAATGCGGTTGTTGTCAGTCTTTCTGACACGGCGGATGGCTGTGATGTTGGCCTTCATCAGATAGTGTTGTGCCAGGTCTGGGGAGATGAGTGGAGAGGTGAGTTTCTCTGGTCAGTGCAGGGGAGCTTTG

Function

NR:

description
PREDICTED: T-complex protein 1 subunit gamma

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151025 False 992 lncRNA 0.49 3 30212012 30214826
TU151026 True 355 lncRNA 0.55 2 30213114 30213567

Neighbor

gene id symbol gene type direction distance location
slc39a1 zip1 coding downstream 143353 30062714 ~ 30068659 (-)
LOC110486432 LOC106580288 coding downstream 149612 30044707 ~ 30062400 (-)
LOC110486409 LOC106605454 coding downstream 170518 29995917 ~ 30041494 (-)
LOC110534642 LOC106605453 coding downstream 225916 29960662 ~ 29986096 (-)
iqgap3 LOC106605450 coding downstream 311247 29880225 ~ 29900765 (-)
tmem79b LOC106605462 coding upstream 9760 30224586 ~ 30249645 (-)
LOC110486577 pmvk coding upstream 134008 30348834 ~ 30352329 (-)
calb1 LOC106580458 coding upstream 150065 30364891 ~ 30382941 (-)
pnp4b LOC106605471 coding upstream 180026 30394852 ~ 30413773 (-)
LOC110486614 LOC106580462 coding upstream 266178 30481004 ~ 30484360 (-)
G131120 NA non-coding downstream 6488 30204914 ~ 30205524 (-)
G131119 LOC106605460 non-coding downstream 9631 30201888 ~ 30202381 (-)
G131028 NA non-coding downstream 128663 30050310 ~ 30083349 (-)
G131082 NA non-coding upstream 173 30214999 ~ 30222052 (-)
G131147 NA non-coding upstream 45809 30260635 ~ 30260944 (-)
G131117 NA non-coding upstream 47743 30262569 ~ 30263466 (-)
G131150 NA non-coding upstream 51003 30265829 ~ 30266286 (-)
G131202 NA non-coding upstream 98175 30313001 ~ 30314155 (-)
LOC110486376 LOC106605451 other downstream 333444 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 1734181 28475823 ~ 28533709 (-)
G129582 NA other downstream 1901280 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2062026 27933389 ~ 28149986 (-)
G129250 NA other downstream 2445480 27766157 ~ 27766532 (-)
c2h8orf37 cssa05h8orf37 other upstream 674867 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 682200 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 977593 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 982247 31196917 ~ 31199241 (-)
G132197 NA other upstream 1321221 31536047 ~ 31543009 (-)

Expression


Co-expression Network