G131246


Basic Information

Item Value
gene id G131246
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30439053 ~ 30440223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU151214
gtccgtagaattttggacatgcgtcctcggggccgtggtcaccagtacctcgtggattgggaggggtacggtcctgaggagaggagttgggttccctctcgggacgtgctggaccgtgcgctgatcgaggatttcctccgttgccgccaggtttcctcctcgagtgcgccaggaggcgctcggtgagtgggggggtactgtcatgtactgtcatgttgtgtcttgtctctgtcctttcccttcaccctgtctccctctgctggtcgttgttaggttacctttccaccccctcttttccccagctgtgccttgtctcctcctaaccacctcgtcaccccttttcccacctgttccctttttccctctgattagtcccctatatctctctctgtttttgttcctgtccttgtcggattcttgtttgttgtgtttcatgcctgaaccagactgtcgtcatgtttgctgtaaccttgtcttgtcctgtcggaatctgccggtccgtctgagcctacctatgtttggtaattaaagaagctctgtttaagttaattcgcttttgggtcctcattcacgcaccgtaacagtaaaaccttgaaatcagcccttgccttaacaggaagccagtgtagtgggcttgctcctaccaactttccgatttggtcctgccatacatacgtatgctatggtcacaagacgctagcactggagtaatttgatcaaatgttttggttctagtcaagattctagcagccgtgtttagcaccaactgaagtttatttagtgctttatccgggtagtcggaaagtagagcattacagtagtctaacctagaagtgacaaaagcatggaataatttttctgcatcatttttggacagaaagtcaatgatttttgcaatgttacgtagatggaaaaaagctgtccttgaaacagtcttgatatgttcgtcaaaagagagatcagggtccagagtaactccgacatccttcacagttttatttgagatgactgtacaaagATCATTTGTTTCTtcggacctagaacaagcatctctgttttgtccgagtttaaaagtagaataatTGCAGCcacccacttccttatgtctgaaacacaggcttccagggagggcaattttggggcttcaccatgtttcatcgaaatgtacagc

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151214 True 1171 lncRNA 0.50 1 30439053 30440223

Neighbor

gene id symbol gene type direction distance location
pnp4b LOC106605471 coding downstream 25280 30394852 ~ 30413773 (-)
calb1 LOC106580458 coding downstream 56112 30364891 ~ 30382941 (-)
LOC110486577 pmvk coding downstream 86724 30348834 ~ 30352329 (-)
tmem79b LOC106605462 coding downstream 189408 30224586 ~ 30249645 (-)
slc39a1 zip1 coding downstream 370394 30062714 ~ 30068659 (-)
LOC110486614 LOC106580462 coding upstream 40781 30481004 ~ 30484360 (-)
aldh5a1 LOC106605473 coding upstream 63402 30503625 ~ 30509152 (-)
LOC110486664 LOC106605475 coding upstream 69635 30509858 ~ 30518027 (-)
gbp LOC106605477 coding upstream 117337 30557560 ~ 30558960 (-)
LOC110486705 ccne2 coding upstream 307832 30748055 ~ 30758543 (-)
G131241 NA non-coding downstream 4211 30434612 ~ 30434842 (-)
G131239 NA non-coding downstream 5547 30433278 ~ 30433506 (-)
G131236 NA non-coding downstream 11026 30427757 ~ 30428027 (-)
G131235 NA non-coding downstream 12829 30425776 ~ 30426224 (-)
G131161 NA non-coding downstream 45638 30392627 ~ 30393415 (-)
G131256 NA non-coding upstream 10868 30451091 ~ 30451453 (-)
G131341 NA non-coding upstream 31278 30471501 ~ 30471819 (-)
G131347 NA non-coding upstream 44568 30484791 ~ 30485262 (-)
G131348 NA non-coding upstream 45129 30485352 ~ 30486009 (-)
G131351 NA non-coding upstream 51606 30491829 ~ 30491932 (-)
LOC110486376 LOC106605451 other downstream 560485 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 1961222 28475823 ~ 28533709 (-)
G129582 NA other downstream 2128321 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2289067 27933389 ~ 28149986 (-)
G129250 NA other downstream 2672521 27766157 ~ 27766532 (-)
c2h8orf37 cssa05h8orf37 other upstream 449470 30889693 ~ 30896340 (-)
trnae-cuc LOC106605367 other upstream 456803 30897026 ~ 30899564 (-)
LOC110486852 LOC106605360 other upstream 752196 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 other upstream 756850 31196917 ~ 31199241 (-)
G132197 NA other upstream 1095824 31536047 ~ 31543009 (-)

Expression


Co-expression Network